Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi541g00003 ATGGGAGGAGAAAACTGTCGTAGCTGCAGATCGTGGATGGACGAAATTTACTGGACCCATTTTCAATTCCTGCAGTTCGCTCAATTTCTCCGTGGCAGTTACGATCAACAACTTGCACTCCCTAAAACATTTTCCGATAATTTAAAGAAACTGCCAGGAAATGTGACCCTTAGAGGTCCTAGTGGGATTGTGTGGAATATAGGATTGATGACTAGAGATGATACCTTGTACTTCACGGACGGTTGGCAACAATTTGTGAAGGATCACTCTCTGAAAGAGAATGATTTCCTTGTCTTCAAGTACAATGGTGAATCTTTGTTTGATAGAAGAGATGTAGATAATTCCTTGAAAGAAGTTAATACCCCTTCTAATGCTGGTGTTGAATGTGCTTATCCTAAAAAATGTGTGCATCTTAACAGTGACAAAGTGCCATTAGCTGTACCCTTGGAAACTCCTCCAACTGAAAAAACTTTCAATGCTGGAGTTGAATCAGCTTGCCCTGAGGAAGTCATGGCTGATGGATTTACCGAGCCTGCAGCTGTTCCCTCCCAACCTAACGGTAAAAGGACCAGGAAGGTAGTTTCTGCTGTTAAGCACGTCCAGATTAAGCAGAGAGGAAAACTGCCAGAAGTATCCAATTCTCATGATACTGCACTTAACTCGGTGACTGAATCTGAACTTGATTCCGGGGGTAAAACTGGGACAAATGAACTATATACCTCAAATAGAAGACCTATCACAGAAAATGAGAAGAAAAATGCCCTCCAGTTGGCCCAGGAAACATGTTCCATTGACAGTTTGTACGTAGTTATGCGACTGACACACGTATACAGGAGATTCTTCATGTCAATCCCTAATAAGTGGATAATAGAACATCTCTCTCCAAGATCTCAAGATGTGATATTACGCATGGGTAATGCTGAATGGACTGTCAGATACAACTTTCGTAATTTTCGTCAAATGGGAGGACTTCTTGGTGGGTGGAAACGTTTTTCCTTGGAAAATAACCTTGAAGAGTATGATGTTTGTGTGTTTACACCAGCAGGCCAAATCAACGACACATTTATCTTGGATGTGAACATTTTCAGAGTTGTTGAGGAGATTGTTCCTCTGACTGAGGTGAATTCTCCAGAAAAAAGGGGTAGGAAAAAACTAATCAAGGCCATTTAG 1170 0.4137 MGGENCRSCRSWMDEIYWTHFQFLQFAQFLRGSYDQQLALPKTFSDNLKKLPGNVTLRGPSGIVWNIGLMTRDDTLYFTDGWQQFVKDHSLKENDFLVFKYNGESLFDRRDVDNSLKEVNTPSNAGVECAYPKKCVHLNSDKVPLAVPLETPPTEKTFNAGVESACPEEVMADGFTEPAAVPSQPNGKRTRKVVSAVKHVQIKQRGKLPEVSNSHDTALNSVTESELDSGGKTGTNELYTSNRRPITENEKKNALQLAQETCSIDSLYVVMRLTHVYRRFFMSIPNKWIIEHLSPRSQDVILRMGNAEWTVRYNFRNFRQMGGLLGGWKRFSLENNLEEYDVCVFTPAGQINDTFILDVNIFRVVEEIVPLTEVNSPEKRGRKKLIKAI 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi541g00003 389 ProSiteProfiles B3 DNA-binding domain profile. 267 365 IPR003340 GO:0003677
Gabi541g00003 389 Pfam B3 DNA binding domain 36 104 IPR003340 GO:0003677
Gabi541g00003 389 Pfam B3 DNA binding domain 274 362 IPR003340 GO:0003677
Gabi541g00003 389 SMART B3_2 26 110 IPR003340 GO:0003677
Gabi541g00003 389 SMART B3_2 268 365 IPR003340 GO:0003677
Gabi541g00003 389 MobiDBLite consensus disorder prediction 222 241 - -
Gabi541g00003 389 SUPERFAMILY DNA-binding pseudobarrel domain 22 107 IPR015300 -
Gabi541g00003 389 CDD B3_DNA 270 363 IPR003340 GO:0003677
Gabi541g00003 389 Gene3D - 245 367 IPR015300 -
Gabi541g00003 389 Gene3D - 20 114 IPR015300 -
Gabi541g00003 389 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 32 367 IPR044837 -
Gabi541g00003 389 CDD B3_DNA 37 105 IPR003340 GO:0003677
Gabi541g00003 389 ProSiteProfiles B3 DNA-binding domain profile. 23 115 IPR003340 GO:0003677
Gabi541g00003 389 SUPERFAMILY DNA-binding pseudobarrel domain 268 349 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi541g00003 Gabi-Chr541 117346 120846 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi541g00003 4 363 REM Transcription Factor Family AT4G33280 32.558 9.04e-56 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Gabi541g00003 B3 7.5e-11 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi541g00003 - - gmx:100777709 456.062