Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi541g00002 ATGACTCATCCATGCACACCAGTCAAACAAGAAAAACAACACACCAACAACCGTGAAGCACATCATTTGGTTGAACAATTTGAGAGTTCTGTTTGCACTGTTTGCAAGAACAGGAGACCAAAATTTGAATGGAAGAGAGAGTTCACATATGCTGAGCTGTATGCAGCCACACAGGGTTTTTCCCTAAAGAACTTTCTGTCAGAAGGTGGGTTTGGTTCTGTCTACAAAGGGGAGTTGCATGGACTGAAGATTGCTGTTAAACAACATGTGTATGAAAGCCACAAAGGAGAGAAGGAATTCAAGTCTGAAGTTGATGCACTCAGCAAAGCAAAACACAAGAATGTGGTCATGCTTCTTGGATCGTGTTCAGAAGGAAACCATAGGCTTCTTGTTTATGAATATGTCTGCAATGGTTCACTGGACCAACATTTATCACAACATTCTCGTAAACCTATTAGCTGGCAAGACAGGGTGAAAGTAGCCAATGGAACTGCAAAAGGATTGCTGTACCTCCATGAGAACAACATCATACATAGAGATATGACACCAAGCAACATTCTTCTTACACATGATTATGAAGTATTGCTGGGTGATTTTGGTTTGGCTAGAATTGTAGCTGAAGATTCCTCATACTTAACAGACTGTGTTGGAAATCTGGCATATTTTGCACCAGAATATGCAGAATTTGGTAAAGTGTCATGTAAGACAGATGTGTATTCTTTTGGATTGGTTCTACTACAGCTAATAAGTGGAATGAGTGCCACAGACAAAAGACTTGGAGGAAAAGATCTATCTGGATGGGCTAGACCACTAATGAAAAAAGGGAACTGTCATGCACTTATTGATGGAAGGTTGATGAACTCCCATGACTGTCATCAACTCTTTTGGATGATTCGTCTAGCTGGAAATTGTCTTAAGAATGATCCTCACAAGCGATTGGATATGACTACAGTGACCAAAGCCTTAAGTCAAATAGCCGAAGGTTGCAGTTGCTGCATTGTAAAGGGCTCTTCAGAATCCGAAGGTGGAAGTGGTAATATTGGTAGTTCCAACAAAGCAAAATAA 1065 0.4047 MTHPCTPVKQEKQHTNNREAHHLVEQFESSVCTVCKNRRPKFEWKREFTYAELYAATQGFSLKNFLSEGGFGSVYKGELHGLKIAVKQHVYESHKGEKEFKSEVDALSKAKHKNVVMLLGSCSEGNHRLLVYEYVCNGSLDQHLSQHSRKPISWQDRVKVANGTAKGLLYLHENNIIHRDMTPSNILLTHDYEVLLGDFGLARIVAEDSSYLTDCVGNLAYFAPEYAEFGKVSCKTDVYSFGLVLLQLISGMSATDKRLGGKDLSGWARPLMKKGNCHALIDGRLMNSHDCHQLFWMIRLAGNCLKNDPHKRLDMTTVTKALSQIAEGCSCCIVKGSSESEGGSGNIGSSNKAK 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi541g00002 354 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 35 329 - -
Gabi541g00002 354 PIRSF ILK 6 332 - -
Gabi541g00002 354 SUPERFAMILY Protein kinase-like (PK-like) 45 320 IPR011009 -
Gabi541g00002 354 ProSitePatterns Tyrosine protein kinases specific active-site signature. 176 188 IPR008266 GO:0004672|GO:0006468
Gabi541g00002 354 FunFam receptor-like cytosolic serine/threonine-protein kinase RBK1 isoform X1 135 337 - -
Gabi541g00002 354 Pfam Protein tyrosine and serine/threonine kinase 62 321 IPR001245 GO:0004672|GO:0006468
Gabi541g00002 354 Gene3D Transferase(Phosphotransferase) domain 1 135 335 - -
Gabi541g00002 354 ProSiteProfiles Protein kinase domain profile. 60 325 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi541g00002 354 Gene3D Phosphorylase Kinase; domain 1 31 134 - -
Gabi541g00002 354 FunFam Proline-rich receptor-like protein kinase PERK8 22 134 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi541g00002 Gabi-Chr541 66248 69933 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi541g00002 27 332 Trihelix Transcription Factor Family AT5G38560 42.006 2.38e-74 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-2 Gabi541g00002 PK_Tyr_Ser-Thr 1.9e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi541g00002 - - gmx:102663919 512.686