Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi53g00001 ATGGCATCTCCACAACCCCATTCAACAGTGGCACGCTACAACACTCATGTGGGTAGAAGCGACCAGCGACATCAAGAACCAAGACTTGCTCGTTTTCATGTGAGTAGAAGCGACCAACAACATCGAGAACAGCAAATTGTCAAGCCCACGGTCTTCAGATTCGAAGTCACTTTTACCCTGCGATACGTCTCAACTGATTTACGTGTCAGAAATGTATCTACCTTATTCCAAACCACTGAATGCATAAGCTGCAAACACTTCTTCGGAAGTACTATTGAAGATATCCATACTGCAAAAAGAAAAATTCAATGTTTCCTACGAAGGTTACTTATACCACGCCCATGGTCCTTGCAGTACTTTACAAGGGAGTGCCTTGATGAAATCTCACAGAGGATCATACCTCAGGTTCAACAACTTTTTGATTCTGATCCTGGAATTATAAAACCACCCGGTTCAAAATACCAAGAGTTCCCTTTGTCTTTGGAAATCGTCATAGATGTGCCGTCAGATGAAGGGAATCAAGAGATGGAGCATGCAGTGATCGAAGACTCCCTCCAACATTTTAGAATGATTCCAGCATCCAAGAACGCCATCAATTCTCTAGAGAAATTCAAGGTTATGAAACAGAATGAGTACTGTACTATCTGCATGGAAAAGTTCGATGTAAGTGGTGATAGTGATGACGTGGCAGCCTCCGCAATGCCCTGCGACCACGTGTTTCACCAACAATGTATTGTGCAATGGCTGCAAACTAGTCATGTGTGCCCTTTGTGTCGCTACCCTATGCCCATCGCCAACGAGTACTGGCCAAACTAG 816 0.4412 MASPQPHSTVARYNTHVGRSDQRHQEPRLARFHVSRSDQQHREQQIVKPTVFRFEVTFTLRYVSTDLRVRNVSTLFQTTECISCKHFFGSTIEDIHTAKRKIQCFLRRLLIPRPWSLQYFTRECLDEISQRIIPQVQQLFDSDPGIIKPPGSKYQEFPLSLEIVIDVPSDEGNQEMEHAVIEDSLQHFRMIPASKNAINSLEKFKVMKQNEYCTICMEKFDVSGDSDDVAASAMPCDHVFHQQCIVQWLQTSHVCPLCRYPMPIANEYWPN 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi53g00001 271 SMART ringv_2 212 259 IPR011016 GO:0008270
Gabi53g00001 271 MobiDBLite consensus disorder prediction 1 26 - -
Gabi53g00001 271 Pfam Ring finger domain 212 259 IPR001841 -
Gabi53g00001 271 SUPERFAMILY RING/U-box 207 266 - -
Gabi53g00001 271 SMART ring_2 213 258 IPR001841 -
Gabi53g00001 271 MobiDBLite consensus disorder prediction 1 16 - -
Gabi53g00001 271 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 68 263 - -
Gabi53g00001 271 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 179 265 IPR013083 -
Gabi53g00001 271 ProSiteProfiles Zinc finger RING-type profile. 213 259 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi53g00001 Gabi-Chr53 38910 39725 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi53g00001 174 263 C3H Transcription Factor Family AT1G18760 34.409 6.84e-14 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi53g00001 - - psat:127082431 150.984