Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi539g00020 ATGGATCCCGACGCCTTCACCACCAGCCTATTCAAGTGGGACCCACGCACTGTCCTTCCTCCTCCTGCCGCCGCGGCGGCGGCTAACCGTTCCCCGCTTCTGGACTACGCGGTGGCTCCTCCGATGGCTCCGGCGGCGGCATACCATCCAGTGAGAGGGCCTCGGGAGCTTGGAGGGCTGGAGGAGTTGTTCCAAGCTTACGGAATCAGATACTACACGGCGGCGAAGATAGCGGAGCTTGGTTTCACGGTGAGCACGCTGGTTGACATGAAGGAAGAGGAGCTCGACGACATGATGAACAGCCTCTCCCATATTTTCAGGTGGGACCTCCTCGTCGGAGAGCGATACGGCGTCAAAGCCGCCGTTAGAGCCGAGCGAAGACGCATCAACGACGAAGAGATGAAGCGCCGCAACCTTCTCTCCACAGACACCACCACCAACGCACTCGATGCTCTCTCTCAAGAAGGTTTGTCGGAGGAGCCGGTGGTGCAACGAGAAAAGGAGGTGGTGGGAAGCGCGGGAGGGAGCACGTGGGAGGTTGTTGCGGCGGAGGAGAGGAGGAAGCAGCAGCAGCAGAGGAGGAGGAGAAGGACGAGGATGAAGACAAATATTGATGATCGTGAAGATCATGAGGAAGGAGAAGAGGATGAAGGAGAAGAAAATGATGAAGGGAATAACAATGGTAATGGTGTTGGTGGTGGGGGCTATGAGAGGCAAAGAGAGCACCCTTTCATCGTTACCGAGCCTGGGGAGGTTGCACGTGGCAAGAAGAACGGTCTAGATTATCTCTTTCACCTCTACGAGCAATGCCGTGAGTTTTTGATCCAAGTTCAGGCCATCGCCAAGGACCGCGGTGAAAAATGCCCCACCAAGGTGACAAATCAGGTGTTTAGGTACGCGAAGAAGGCTGGAGCTAGCTACATAAACAAGCCCAAAATGAGACACTACGTGCACTGCTACGCATTGCATTGTCTTGACGAGGAGGCGTCGAATGAGCTGAGAAGGGCTTTGAAGGAGAGAGGGGAGAACGTTGGAGCGTGGAGGCAAGCATGTTATAAGCCACTTGTGGCAATCGCAGCACGTCAAGGTTGGGACATTGATGCCATATTCAATGCGCATCCTCGTCTTTCAATATGGTACGTCCCGACAAAGCTCCGTCAGCTTTGTCATGCCGAGAGGAACACCGCCGCCGCTTCGAGCTCTGTCTCTGTCGACAACAACGTTCATCTTCCTTTCTAA 1239 0.5496 MDPDAFTTSLFKWDPRTVLPPPAAAAAANRSPLLDYAVAPPMAPAAAYHPVRGPRELGGLEELFQAYGIRYYTAAKIAELGFTVSTLVDMKEEELDDMMNSLSHIFRWDLLVGERYGVKAAVRAERRRINDEEMKRRNLLSTDTTTNALDALSQEGLSEEPVVQREKEVVGSAGGSTWEVVAAEERRKQQQQRRRRRTRMKTNIDDREDHEEGEEDEGEENDEGNNNGNGVGGGGYERQREHPFIVTEPGEVARGKKNGLDYLFHLYEQCREFLIQVQAIAKDRGEKCPTKVTNQVFRYAKKAGASYINKPKMRHYVHCYALHCLDEEASNELRRALKERGENVGAWRQACYKPLVAIAARQGWDIDAIFNAHPRLSIWYVPTKLRQLCHAERNTAAASSSVSVDNNVHLPF 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi539g00020 412 PANTHER PROTEIN LEAFY 1 411 IPR002910 GO:0003677|GO:0006355
Gabi539g00020 412 MobiDBLite consensus disorder prediction 180 237 - -
Gabi539g00020 412 Gene3D Protein LEAFY 234 403 IPR038276 -
Gabi539g00020 412 Pfam Floricaula / Leafy protein SAM domain 56 133 IPR035079 -
Gabi539g00020 412 Pfam DNA Binding Domain (C-terminal) Leafy/Floricaula 232 397 IPR035209 GO:0003677
Gabi539g00020 412 Coils Coil 181 201 - -
Gabi539g00020 412 MobiDBLite consensus disorder prediction 209 223 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi539g00020 Gabi-Chr539 157513 159483 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi539g00020 1 394 Orphan Transcription Factor Family AT5G61850 65.854 5.52e-166 471
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LFY Gabi539g00020 C_LFY_FLO 5.4e-109 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi539g00020 - - gmx:100798196 615.92