Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi537g00003 ATGGAAAGCTTCAAGGTGCTAGTTTTGTGCTCTCTTTTGTTCTCCTTCATACCAAGTTTCAACACGCTGGACACCATTGCTCCAGGACAATCTGTCAAAGATAATGAGACTCTAGTTTCAGCATCTGGGATTTTTGAAGCTGGATTCTTCAACTTTGGAGATCAAAATAGCCAATATTTTGGTATATGGTACAAGGGTCTTTCTCCAAGAACAGTTGTATGGATAGCAAATAGAGATACCCCACTTGGAAGCTCCTCAGGTGTTTTGAATGTCACTGATGGAGGAAATCTTGTTATTCTTAATAGCACAGGTTCTTCAATCTGGTTCACCAATACATCAACAACTGCAAAGAATCCAATTGTGCAACTCTTGGAAACTGGAAACCTTGTTGTGAAAGAAGAAAGCAACCCAGAGAATCTTCTGTGGCAGAGTTTTGATCATCCTGGGGACACTTTGCTCCCAGGGATGAAAATTACAAGCAACATAGTAAGTGGTAATTATACATCTCTGATATCATGGAGAGACACACAAAATCCTGGTACTGGTTTGTATTCATACCATATAGATACTCATGGTTATCCTCAAGTAGTGATTACAAAGGGAGAGACATTATTGTATAGAACAGGTTCATGGAATGGCAATACTTTATCTGGAATTTCTTCTGAAACACTGTACAAAAACTTCAATTTCTCTTTTGTGATAACTGATCAGGAAGTTTCTTATGGTTTTGAACTCTTTAACCAGTCAATTATTACAAGATACATACTCACTTCAACAGGTCAAGTTGAACGTTTCAAATTTTCAGATCAGACAAATAGTTGGCAGATTTTCTTTTCTGGCCCTGTAGACCAGTGTGATAATTATGCCATTTGTGGTGCAAATTCTAATTGTGATGTTAATAACTCTCCAATATGCGAATGCCTTCAGGGTTTCATTCCCAAATCTCAAGATAATTGGAATTCACAAAAGTGGTCTGATGGGTGTGTTAGGAGAGTTAATTTAACTTGTGGCAACAGTGATGATGGCTTTCTGATGTATCCGGGAATGAAATTGCCTGACACATCAACCTCATGGTTTAATAAGAGCATGACCCTTGAGGAATGTAAGAACTTTTGTTTGAAAAACTGCTCTTGCACAGCATGTGCAAATTTAGATATCAGAGATGGTGGAAGTGGCTGCTTGCTTTGGTTTAATAAAATTGTGGATGTGAGAAAACTACCCTCTGGAGGACAAGATTTTTATGTAAGAGTGGCATCTTCAGAACTAGACCATAAAAAGGGCTTGAACAAGAAGAAGCTTGCAGGAATTTTGGTAACCTGTATGTTCGTCTTTGTCATGATAATACTGGGAGTGGCCATACTTTGGAGGAAGAAACTCAAGAAGCAAGGGAAGAACCAAATAACTAGCTGGAAGAATCACGCTGATAACAAAGAGAAGGAAGACATTGACATACCAATATTTGATTTATCAACCATAGCTAACGCAACTAGTAACTTCTCCATTACTAAAAAATTGGGAGAAGGTGGATTTGGACCAGTTTACAAGGGTACATTGACAAATGGGCAAGATATAGCAGTGAAGAGGCTTTGCAAAAATTCAGGACAAGGACCAAAAGAGTTCATAAATGAAGTAGTGCTAATTGCCAATCTTCAGCATCGAAATCTTGTGAAACTTCTTGGGTGCTGCATTCATGATGCTGAGAGACTCTTAATATATGAATTCTTGACCAACAGAAGCTTGGACTGCTTCATTTTTGATCAAGCTAGAAAAAGTTCACTGCATTGGGCTCAGCGTTTCCAAATTATTTGTGGGATTGCAAGAGGGCTTCTCTATCTTCATGAAGATTCTAGATTAAGGATTATCCACAGAGATCTCAAAACTAGCAATATTCTTCTTGATGAAAATATGAATCCAAAAATATCAGACTTTGGTCTTGCTAGAGCATTTGGGGGAGATGAAGATGAAGGCATAACAAAGAGAATAGCAGGAACTTATGGCTATATTTCTCCAGAGTATGCAGCCCATGGATTTTTCTCTGTGAAATCTGATGTCTTCAGTTTTGGTGTTATTGTACTAGAGATAATTAGTGGAACTAAAAATAGGGAATATTTTGACCATCATGATCTTGACCTTCTTGGACATGCATGGAGACTGTGGAGTGAAGAGAAGTCATTGAAGCTGATAGATGAATCACTAGGTGATTCAATTGGTTTTGCTGAAGCTGAAATATTGAGATGCATTATCATTGGACTTTTATGTGTACAAGATAGACCAGAGGATAGGCCAGACATGTCAGCTGTAGTTCTAATGCTGAATGGTGAGAAACCATTGCCAAGGCCAAGGGAACCTGCCTTTTATCCACACCAATTTGGCTCTTCATCAGGAAGTACTAAACTGCATTCAGCCAATGAAATTTCCATGTCATTGTTAAATGCAAGATAG 2442 0.3829 MESFKVLVLCSLLFSFIPSFNTLDTIAPGQSVKDNETLVSASGIFEAGFFNFGDQNSQYFGIWYKGLSPRTVVWIANRDTPLGSSSGVLNVTDGGNLVILNSTGSSIWFTNTSTTAKNPIVQLLETGNLVVKEESNPENLLWQSFDHPGDTLLPGMKITSNIVSGNYTSLISWRDTQNPGTGLYSYHIDTHGYPQVVITKGETLLYRTGSWNGNTLSGISSETLYKNFNFSFVITDQEVSYGFELFNQSIITRYILTSTGQVERFKFSDQTNSWQIFFSGPVDQCDNYAICGANSNCDVNNSPICECLQGFIPKSQDNWNSQKWSDGCVRRVNLTCGNSDDGFLMYPGMKLPDTSTSWFNKSMTLEECKNFCLKNCSCTACANLDIRDGGSGCLLWFNKIVDVRKLPSGGQDFYVRVASSELDHKKGLNKKKLAGILVTCMFVFVMIILGVAILWRKKLKKQGKNQITSWKNHADNKEKEDIDIPIFDLSTIANATSNFSITKKLGEGGFGPVYKGTLTNGQDIAVKRLCKNSGQGPKEFINEVVLIANLQHRNLVKLLGCCIHDAERLLIYEFLTNRSLDCFIFDQARKSSLHWAQRFQIICGIARGLLYLHEDSRLRIIHRDLKTSNILLDENMNPKISDFGLARAFGGDEDEGITKRIAGTYGYISPEYAAHGFFSVKSDVFSFGVIVLEIISGTKNREYFDHHDLDLLGHAWRLWSEEKSLKLIDESLGDSIGFAEAEILRCIIIGLLCVQDRPEDRPDMSAVVLMLNGEKPLPRPREPAFYPHQFGSSSGSTKLHSANEISMSLLNAR 813
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi537g00003 813 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 575 778 - -
Gabi537g00003 813 SMART ntp_6 338 417 IPR003609 -
Gabi537g00003 813 SMART serkin_6 499 769 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi537g00003 813 Pfam Protein tyrosine and serine/threonine kinase 500 768 IPR001245 GO:0004672|GO:0006468
Gabi537g00003 813 ProSiteProfiles Bulb-type lectin domain profile. 23 144 IPR001480 -
Gabi537g00003 813 ProSiteProfiles Protein kinase domain profile. 499 785 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi537g00003 813 Pfam PAN-like domain 336 403 IPR003609 -
Gabi537g00003 813 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 19 145 - -
Gabi537g00003 813 Gene3D Transferase(Phosphotransferase) domain 1 575 777 - -
Gabi537g00003 813 Gene3D - 19 145 IPR036426 -
Gabi537g00003 813 CDD PAN_AP_plant 332 418 - -
Gabi537g00003 813 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 463 574 - -
Gabi537g00003 813 CDD B_lectin 30 148 IPR001480 -
Gabi537g00003 813 Pfam S-locus glycoprotein domain 206 315 IPR000858 GO:0048544
Gabi537g00003 813 CDD STKc_IRAK 505 773 - -
Gabi537g00003 813 SUPERFAMILY alpha-D-mannose-specific plant lectins 71 213 IPR036426 -
Gabi537g00003 813 ProSiteProfiles PAN/Apple domain profile. 336 418 IPR003609 -
Gabi537g00003 813 Gene3D Hepatocyte Growth Factor 334 415 - -
Gabi537g00003 813 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 335 417 - -
Gabi537g00003 813 Gene3D Phosphorylase Kinase; domain 1 471 574 - -
Gabi537g00003 813 SMART blect_4 29 148 IPR001480 -
Gabi537g00003 813 ProSitePatterns Serine/Threonine protein kinases active-site signature. 620 632 IPR008271 GO:0004672|GO:0006468
Gabi537g00003 813 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 9 758 - -
Gabi537g00003 813 PIRSF SRK 1 813 IPR024171 GO:0004674
Gabi537g00003 813 SUPERFAMILY Protein kinase-like (PK-like) 484 791 IPR011009 -
Gabi537g00003 813 Pfam D-mannose binding lectin 71 174 IPR001480 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi537g00003 Gabi-Chr537 62226 66138 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi537g00003 426 788 Receptor kinase-like Gene Family AT4G23190 50.678 1.59e-121 377
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gabi537g00003 PK_Tyr_Ser-Thr 1.9e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi537g00003 - - vum:124842963 1295.8