Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi537g00001 ATGAAAAATCTTTGTCTTGTGTTTGTCTTTACTAAGACTCTCTTGTTCTTTTTTCATATCTCCAGTGCAGCTGACTCCATATCACGGTTCCAATCACTTTCTGAAGGAAAGACCTTAGTTTCTGAAGATGGATACTTTGAATTGGGTTTCTTCAGTCCAGCAAGTTTTGCAAACCGTTACTTGGGAATATGGTACAAGCATATACCAGTTAAGACTGTTGTTTGGGTTGCCAATGGAGCCAACCCTGTGAAAGACAACTCTAGCATCTTGCATATAAACAGTGAAGGGAATCTTGTTCTTGTTAACCATGATTTGATTGTGTTTTGGTCAGCAGAGTCCAGAAAGAAGGTTCTGGTTCTGAATCCCATTGTTCAGCTCTTAAATTCTGGGAATTTAGTACTGAGAGATGAGAGAGATGAAGATCCTGAAAACTACATGTGGCAAAGCTTTGATTATCCTTCTGATACATTACTACCAGGAATGAAGTTGGGTTGGGACTTAAAAACAGGTCTTGAATGGCGTGTATCTTCTTGGAAGAACTGGGATGATCCATCACCTGGAGACTTTTCTTGGGGTATCTCACTTGAAGGTTTTCCTCAAATAATTATGTGGAAAGGCTCAAAAGAGTACTACCGTGGTGGATCTTGGAATGGCCTTGGATTCACTGGCGCCCCAGAATTGAAGAACAATCCTGTTTTTGAGTTCAAGTTTGTCTCCAACAAGGATGAAGTGTACTACACATACAACCTTAGGAATAAGTCAATAATTTCAAGGATTGTTATGAACCAAACCATTAGCACTCGCCAGAGGTACATATGGATTGAAGAAGCTCAATCTTGGAGGCTTTATGCATCTGTGCCTAGAGATAACTGTGACTCGTATAATCTTTGTGGACCATATGGAAATTGCATCGTAGGTGACTCGCCAGTGTGCCAGTGTTTAGAAGGGTTTAAGCCAAGATCACAAGGAAACTGGGACACCATGGATTGGACTACAGGATGTTTACTCACTGAACAATTGAGCTGTGAGGATAGGAGCAAACATGGGTTTTTGAAATTTAGTGGGCTGAAATATCCTGATACTTCACATTCTTGGGTCAATGAGAGTATGAATCTCAATGAATGCAGGGTTAGATGCTTAGAGAATTGTTCATGTAAAGCTTATGCAAATTCAGATATGAGAGGAGGAGGTAGTGGCTGTTTGATGTGGTTCGGTGACCTCAAGGATATCAGACAATTTTCTAGAAGTGGTCCGGATCTATATATTCGAATGAAAATTTCAGAGTTAGCCTTGAAAGAAAAACACAAGAATAAGGTGGTAGCAATAATCATCATGATCTCCTCAGTTCTTATGGTGATTCTGGCCTTGCTCTATGTTGTCAAGAGAATGAAAAAGTTAAGAGCTAATGAAACAGAGAGAAACTTAATGGCAGAGAATAATGATGAAGGCGATAGAGAAGACTTGGAGCTTCCTTTCTTTGACCTTGCTACGATTATCAAAGCAACTAATGGCTTCTCAATTAACAATAAGCTTGGAGAAGGTGGATTTGGGGCTGTATACATGGGTACCCTACCAGATGGACAAGAAATTGCTGTGAAGAGGCTCTCACAATGTTCTGGACAGGGGTTTAATGAATTTAAGAATGAAGTCATATTGATTGCAAAACTTCAGCATCGAAACTTGGTTAAGCTTCTTGGTTGTTGCAATGAAGGAGAGGAGAAGATGCTGATCTATGAATACATGCCTAACAAAAGCCTAGACTCCTTTATCTTTGATCATGCAAAAGGTAAAGTTTTAGATTGGTCTAAGCGCTTCAACATTATATGTGGAATTGCCCGAGGACTTCTATATCTTCATCAAGATTCTAGGTTGAGGATAATACATAGAGATCTTAAAGCAAGTAATGTCTTACTTGACAATGAGTTGAACCCAAAAATATCCGATTTTGGCATGGCTAGAACTTTTGGGGGAGATCAAACTGAAGGAAACACAAGGAGGGTTGTTGGAACATATGGTTATATGGCACCTGAATATGCCATTCATGGGCTATTCTCAGTTAAATCTGATGTCTTCAGCTTTGGTGTATTACTGTTGGAGATAATAAGTGGAAAGAAGAACAGAGGATTTTCCAACTCAAATAACAATATAGACCTTATTGGACATGCATGGAGATTTTGGACAGAAAGAAGACCATTGGATTTGATAGATTCATGCATGGAGAATTCATCTGTTCTATCAGAAGCGTTGCGTTGCATCCATATCAGTCTTCTGTGTGTCCAACAGCATCCTGAGGATAGACCAAGTATGTCAACTGTGGTTGTGATGTTGAGTAGTGAGGGTGCCTTGCCTCAACCTAAGGAACCTGCTTTCCTTATGGAGAAGTACTTTCTTGAAGGTGATTCTTCTAAGAAGCAGAAGTTTTCGTCAACCAATGAAATAAGTTTAACCATGTTAGAGCCCCGATAG 2466 0.397 MKNLCLVFVFTKTLLFFFHISSAADSISRFQSLSEGKTLVSEDGYFELGFFSPASFANRYLGIWYKHIPVKTVVWVANGANPVKDNSSILHINSEGNLVLVNHDLIVFWSAESRKKVLVLNPIVQLLNSGNLVLRDERDEDPENYMWQSFDYPSDTLLPGMKLGWDLKTGLEWRVSSWKNWDDPSPGDFSWGISLEGFPQIIMWKGSKEYYRGGSWNGLGFTGAPELKNNPVFEFKFVSNKDEVYYTYNLRNKSIISRIVMNQTISTRQRYIWIEEAQSWRLYASVPRDNCDSYNLCGPYGNCIVGDSPVCQCLEGFKPRSQGNWDTMDWTTGCLLTEQLSCEDRSKHGFLKFSGLKYPDTSHSWVNESMNLNECRVRCLENCSCKAYANSDMRGGGSGCLMWFGDLKDIRQFSRSGPDLYIRMKISELALKEKHKNKVVAIIIMISSVLMVILALLYVVKRMKKLRANETERNLMAENNDEGDREDLELPFFDLATIIKATNGFSINNKLGEGGFGAVYMGTLPDGQEIAVKRLSQCSGQGFNEFKNEVILIAKLQHRNLVKLLGCCNEGEEKMLIYEYMPNKSLDSFIFDHAKGKVLDWSKRFNIICGIARGLLYLHQDSRLRIIHRDLKASNVLLDNELNPKISDFGMARTFGGDQTEGNTRRVVGTYGYMAPEYAIHGLFSVKSDVFSFGVLLLEIISGKKNRGFSNSNNNIDLIGHAWRFWTERRPLDLIDSCMENSSVLSEALRCIHISLLCVQQHPEDRPSMSTVVVMLSSEGALPQPKEPAFLMEKYFLEGDSSKKQKFSSTNEISLTMLEPR 821
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi537g00001 821 Gene3D - 18 150 IPR036426 -
Gabi537g00001 821 Pfam Protein tyrosine and serine/threonine kinase 506 775 IPR001245 GO:0004672|GO:0006468
Gabi537g00001 821 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 341 424 - -
Gabi537g00001 821 Gene3D Phosphorylase Kinase; domain 1 461 580 - -
Gabi537g00001 821 Pfam S-locus glycoprotein domain 211 320 IPR000858 GO:0048544
Gabi537g00001 821 ProSiteProfiles Protein kinase domain profile. 505 790 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi537g00001 821 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 12 767 - -
Gabi537g00001 821 CDD STKc_IRAK 511 776 - -
Gabi537g00001 821 ProSiteProfiles PAN/Apple domain profile. 342 425 IPR003609 -
Gabi537g00001 821 ProSiteProfiles Bulb-type lectin domain profile. 24 147 IPR001480 -
Gabi537g00001 821 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 20 150 - -
Gabi537g00001 821 Pfam Domain of unknown function (DUF3403) 777 821 IPR021820 GO:0004674
Gabi537g00001 821 CDD B_lectin 31 153 IPR001480 -
Gabi537g00001 821 ProSiteProfiles EGF-like domain profile. 287 322 IPR000742 -
Gabi537g00001 821 PIRSF SRK 1 821 IPR024171 GO:0004674
Gabi537g00001 821 CDD PAN_AP_plant 339 423 - -
Gabi537g00001 821 ProSitePatterns Protein kinases ATP-binding region signature. 511 533 IPR017441 GO:0005524
Gabi537g00001 821 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 468 580 - -
Gabi537g00001 821 SUPERFAMILY Protein kinase-like (PK-like) 490 776 IPR011009 -
Gabi537g00001 821 ProSitePatterns Serine/Threonine protein kinases active-site signature. 626 638 IPR008271 GO:0004672|GO:0006468
Gabi537g00001 821 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 581 784 - -
Gabi537g00001 821 SUPERFAMILY alpha-D-mannose-specific plant lectins 73 184 IPR036426 -
Gabi537g00001 821 SMART ntp_6 345 424 IPR003609 -
Gabi537g00001 821 Pfam D-mannose binding lectin 72 179 IPR001480 -
Gabi537g00001 821 SMART blect_4 30 153 IPR001480 -
Gabi537g00001 821 Gene3D Transferase(Phosphotransferase) domain 1 581 784 - -
Gabi537g00001 821 Pfam PAN-like domain 342 410 IPR003609 -
Gabi537g00001 821 SMART serkin_6 505 757 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi537g00001 Gabi-Chr537 8704 12950 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi537g00001 439 793 Receptor kinase-like Gene Family AT4G23230 56.742 8.01e-133 407
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gabi537g00001 PK_Tyr_Ser-Thr 5.6e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi537g00001 - - jre:109013535 1118.99