LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gabi532g00008	ATGGCTCATGAGGATTGGGATCTCTTTGCAATTGTAAGAAGCTACAAAACCAACTTTGCTCCTATCACCGAAATTCCATCCCCCACCAGCACCACCATAATTCAAGACACTAATCCTTGCTTGGCTAATTTTACTGTTAGCCAAGAAAATGATTCATTTTCTTTTCCCAATCTTGTGCAACCTAGAACCAATGAGTTCCAAGAGCTACACCAATTGTTAATGAACTCCAACCCCACCACCCCCACAAGCACCACTAGCACTAGTGGTAATAGCATCAATCCCAATTCAACTTTTTCTAACCTTGCAGGATTCATTGGACAACACCATCCTCTGCCTGTTCCTCCCCCAAATTACCCCTCCATTGGAGGCTCCACTACTGGTTTAGAAAGATTCCATCACCAACAACAGCAACCACAGCCACAACCGAAAGCACAGCAACCCCAACCCCCAGAACAACAACAACAGCAGCAGCACAATGAACTACAAGTTCAAGTACCCCAAGCAAGTTCAAGTTCTATTGTTTTACCAAACACACAACCACAAACACCCAGGTCAAGAAAAAGAAAAAGCCAACAGAAGAAAATGGTATGCCATGTGACCGCAGATAACGTCTCATCAGATTTCTGGGCATGGCGAAAATATGGACAAAAACCTATCAAAGGGTCTCCACATCCAAGGAACTATTACAGATGCAGCAGCTGCAAAGGATGTGCTGCGAGAAAACAGGTTGAGAGAAGCACAACTGAACCCAACATGTTCATGGTGACATACACCGGAGACCACAAGCACGCCAAACCAGCTCACCGGAATTCTCTCGCCGGCAGTACCCGAAACAAGCCATCCACGACCCGTTTACCCGATATCCACCAAACCGGGTCATCATCCAATGAGGGAAACGTGAATCCGTCAAGTTCACAATTTTCTCCCATCCAATTGAAACCGGCTTCGCCGGAGAAGAACGGCGCCTTGGTAGCTGTCAGGGAACCCGATGACCCGGACCCGAAAACCGAACCCGACTTGGCCTCAGAAGATGATGATGACGTGCTGATACCCAACACGACGGCCATGTTAGACACCGTTTTTTTGGGTTTGCACCACTTTGACGGCGGCGGAGGCGGCGGCGGTGTCACCAGGGCCAACAGAAACACCAAACCCGCGGGTGGGTCGGATCCTACAACGTATCTGGTTTGA	1191	0.4845	MAHEDWDLFAIVRSYKTNFAPITEIPSPTSTTIIQDTNPCLANFTVSQENDSFSFPNLVQPRTNEFQELHQLLMNSNPTTPTSTTSTSGNSINPNSTFSNLAGFIGQHHPLPVPPPNYPSIGGSTTGLERFHHQQQQPQPQPKAQQPQPPEQQQQQQHNELQVQVPQASSSSIVLPNTQPQTPRSRKRKSQQKKMVCHVTADNVSSDFWAWRKYGQKPIKGSPHPRNYYRCSSCKGCAARKQVERSTTEPNMFMVTYTGDHKHAKPAHRNSLAGSTRNKPSTTRLPDIHQTGSSSNEGNVNPSSSQFSPIQLKPASPEKNGALVAVREPDDPDPKTEPDLASEDDDDVLIPNTTAMLDTVFLGLHHFDGGGGGGGVTRANRNTKPAGGSDPTTYLV	396

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gabi532g00008	396	SUPERFAMILY	WRKY DNA-binding domain	200	266	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Gabi532g00008	396	PANTHER	WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED	5	362	IPR044810	GO:0003700
	Gabi532g00008	396	MobiDBLite	consensus disorder prediction	148	185	-	-
	Gabi532g00008	396	MobiDBLite	consensus disorder prediction	75	195	-	-
	Gabi532g00008	396	Pfam	WRKY DNA -binding domain	207	263	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Gabi532g00008	396	MobiDBLite	consensus disorder prediction	271	313	-	-
	Gabi532g00008	396	ProSiteProfiles	WRKY domain profile.	200	266	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Gabi532g00008	396	SMART	WRKY_cls	205	265	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Gabi532g00008	396	MobiDBLite	consensus disorder prediction	120	141	-	-
	Gabi532g00008	396	MobiDBLite	consensus disorder prediction	382	396	-	-
	Gabi532g00008	396	Gene3D	WRKY domain	188	259	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Gabi532g00008	396	MobiDBLite	consensus disorder prediction	75	103	-	-
	Gabi532g00008	396	MobiDBLite	consensus disorder prediction	260	346	-	-
	Gabi532g00008	396	MobiDBLite	consensus disorder prediction	373	396	-	-
	Gabi532g00008	396	FunFam	WRKY transcription factor 22	188	259	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gabi532g00008	Gabi-Chr532	83290	84776	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gabi532g00008	150	375	WRKY Transcription Factor Family	AT4G01250	43.668	4.19e-47	161

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	WRKY	Gabi532g00008		WRKY	3.9e-24	CL0274

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gabi532g00008	-		-	aprc:113866622	393.66