Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi530g00003 ATGGAAGGATCCTTATTAGTGAGAAAAGGAGCATGGAGTAAAGAGGAAGATGACCTTCTGAGGGCGTATGTGCAACAATATGGAGAAGGAAAATGGCACCTTGTGCCTATAAGAACAGGCTTAAACAGATGCCGTAAAAGCTGTAGACTTCGGTGGTTGAATTATCTAAAACCAAATATCAAGAGAGGAGAATTCAGTGTGGACGAAATTGATCTGATGATGAGAATGCATAGACTTTTGGGAAACAGATGGTCCCTGATTGCTGGAAGACTTCCTGGAAGAACTTCTAACGATGTGAAAAACTACTGGAATACTTATATTCGAAGGAATGTATCCTCTCATAAGGAAGTCAACATTGCAAAGCCAAAGGAAACAGTCAAACCTAACATAGTGATAAAGCCTCAGCCTCTAACTTTCTCAAGAAGGAGATATGTTAAGGTCGATGAGAGTAAGGCCAAACAATGTACTATTGAAACACGTGCAGCTTCATCAGAGTGCAATAATCTTTCAGATATGTGGTGGGAAACGGTGAAGGGCCACGACAATGACCATGAGGCAGGCAACGCAAAGAACGATATATGCTGCTTGGATGACCAAAATGGGAAACTCTTGATAGACCATAATTGGAATGAGATAAATACTTCATTGACCACACAAGCTGGGGACTTTCTTGTAGAAACAGTGATGGACGACAAGGGAGTTGGCAACACAGAGAATGACATGTTTCGCTTGGGTGATAATGATGGGAAGCTCATGAAAGACATTAATGGGAATGAGGAGCTTACATCATTGACCACACAAGCTGGGGACTTTCTTATTGGAGATCAGTGTTGGAGTGATTTTCTTTTGGATACCAATTTGTGGAATTTATGA 873 0.4112 MEGSLLVRKGAWSKEEDDLLRAYVQQYGEGKWHLVPIRTGLNRCRKSCRLRWLNYLKPNIKRGEFSVDEIDLMMRMHRLLGNRWSLIAGRLPGRTSNDVKNYWNTYIRRNVSSHKEVNIAKPKETVKPNIVIKPQPLTFSRRRYVKVDESKAKQCTIETRAASSECNNLSDMWWETVKGHDNDHEAGNAKNDICCLDDQNGKLLIDHNWNEINTSLTTQAGDFLVETVMDDKGVGNTENDMFRLGDNDGKLMKDINGNEELTSLTTQAGDFLIGDQCWSDFLLDTNLWNL 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi530g00003 290 Gene3D - 64 131 - -
Gabi530g00003 290 ProSiteProfiles Myb-like domain profile. 8 56 IPR001005 -
Gabi530g00003 290 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 7 175 - -
Gabi530g00003 290 Gene3D - 9 61 - -
Gabi530g00003 290 CDD SANT 64 107 IPR001005 -
Gabi530g00003 290 FunFam Myb transcription factor 9 61 - -
Gabi530g00003 290 SUPERFAMILY Homeodomain-like 8 103 IPR009057 -
Gabi530g00003 290 CDD SANT 11 56 IPR001005 -
Gabi530g00003 290 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 7 60 IPR017930 -
Gabi530g00003 290 Pfam Myb-like DNA-binding domain 62 106 IPR001005 -
Gabi530g00003 290 Pfam Myb-like DNA-binding domain 9 56 IPR001005 -
Gabi530g00003 290 SMART sant 8 58 IPR001005 -
Gabi530g00003 290 SMART sant 61 109 IPR001005 -
Gabi530g00003 290 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 61 111 IPR017930 -
Gabi530g00003 290 ProSiteProfiles Myb-like domain profile. 57 107 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi530g00003 Gabi-Chr530 67182 69093 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi530g00003 7 140 MYB Transcription Factor Family AT1G66370 58.784 3.39e-57 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gabi530g00003 Myb_DNA-binding 3.1e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi530g00003 - K16166 gmx:100306270 268.085