Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi52g00008 ATGCCAAAGTATCAGACCATTGCTGAAGAACAGAGAAGAGAAAAGGGTAGAGAAAAAAAGCTTGGTTCGTTGCAGAAGATCCCGAACAATTTCACAAGGAGATATGGTGGTGGTCTGCCAAACCCAATGTTTCTCAAACCCCCAGACGGCACTGAATGGAAAGTATATTGGACTAAACATGATGGTCAAATTTTGCTTGAAAAGGGTTGGGCAGAATTTGCTAGATATTACTCCCTCGATCATGGGCATTTAGTAGTGTTTGAATATGAGAAAAATTCTTCTCATATTGAGGTACACATATTTGACAAGAATGCCCTTGAAATAGACTATCCTTTCCATGACCATATCGTTGATGATTCAGTTGAAATTTTGAATGAGCAACCTCCATGTCAGAAGAAAAGACTGAAATCACCAATGTCATCTTGTCCAACAAGTAAGAAATCGAGAACTGGCATAGCTAGAGACGATGAAAGAAGCCCCAAACCGCAAAATTTTCTTCCGCATGTCCAAACTAAAGGTAGTCAATCTGAAGCAACAAACTTTGAGATGCCAATAACTGCATCTGTCAAGCAAGAGTTGGATGGTGGGAATGCAAGCAAAAGAACTTCACTGTTGATTACTCCCTGCCCTGGGACAACCGGAGCTCTAGAAGAAGCTAAGAAGTTCACCTCAGAAAATCCCTTTTTCATAATCAATATAAGGCAAAGTTATGTGAGCAAAAGCAGACCAAGTATACCATATGCCTTCGCCAGAAAGTATGTACAAAAGAACATGCAGAATGTGATGATACAGTTTGGGAAGAAGTTGTGGCCTGTAAGGTTGCTCCATTATCCAATAAGAAGTGTGGTCAGTTTTGCCTGTGGTTGGCACCTTTTTGCTGAAGAAAGCAAATTGCGAGTTGGAGATATTTGTATCTTTGAACTCATTAATAGAGAAGAGTGTGTGTTTGATGTTCATATTTTCAGAGGCCACATATAG 978 0.3998 MPKYQTIAEEQRREKGREKKLGSLQKIPNNFTRRYGGGLPNPMFLKPPDGTEWKVYWTKHDGQILLEKGWAEFARYYSLDHGHLVVFEYEKNSSHIEVHIFDKNALEIDYPFHDHIVDDSVEILNEQPPCQKKRLKSPMSSCPTSKKSRTGIARDDERSPKPQNFLPHVQTKGSQSEATNFEMPITASVKQELDGGNASKRTSLLITPCPGTTGALEEAKKFTSENPFFIINIRQSYVSKSRPSIPYAFARKYVQKNMQNVMIQFGKKLWPVRLLHYPIRSVVSFACGWHLFAEESKLRVGDICIFELINREECVFDVHIFRGHI 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi52g00008 325 Gene3D - 11 105 IPR015300 -
Gabi52g00008 325 Pfam B3 DNA binding domain 228 322 IPR003340 GO:0003677
Gabi52g00008 325 Pfam B3 DNA binding domain 26 104 IPR003340 GO:0003677
Gabi52g00008 325 SUPERFAMILY DNA-binding pseudobarrel domain 222 322 IPR015300 -
Gabi52g00008 325 ProSiteProfiles B3 DNA-binding domain profile. 228 324 IPR003340 GO:0003677
Gabi52g00008 325 MobiDBLite consensus disorder prediction 130 178 - -
Gabi52g00008 325 CDD B3_DNA 27 102 IPR003340 GO:0003677
Gabi52g00008 325 Gene3D - 211 324 IPR015300 -
Gabi52g00008 325 MobiDBLite consensus disorder prediction 1 21 - -
Gabi52g00008 325 MobiDBLite consensus disorder prediction 164 178 - -
Gabi52g00008 325 CDD B3_DNA 227 322 IPR003340 GO:0003677
Gabi52g00008 325 ProSiteProfiles B3 DNA-binding domain profile. 27 104 IPR003340 GO:0003677
Gabi52g00008 325 SUPERFAMILY DNA-binding pseudobarrel domain 25 104 IPR015300 -
Gabi52g00008 325 PANTHER B3 DOMAIN-CONTAINING 19 318 - -
Gabi52g00008 325 SMART B3_2 17 104 IPR003340 GO:0003677
Gabi52g00008 325 SMART B3_2 229 324 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi52g00008 Gabi-Chr52 129680 131425 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi52g00008 17 322 B3 DNA Binding Superfamily AT3G18990 29.167 6.02e-31 118
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Gabi52g00008 B3 1.7e-12 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi52g00008 - - lang:109359484 308.916