Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi52g00007 ATGTCAAAGATGATCCCAAACAATTTCACAAGGAGATATGGTGATGGTCTGCCAAACCCAATGTTTCTCAAAACCCCTGACGGCATTGAATGGAAAGTATATTGGACTAAACATGATGGTCAAATTTTGTTTGAAAAGGGATGGAAAGAATTTGCTAGTTATTACTCCCTAGATCATGGGCATTTAGTAGTGTTTGAATATGAGAAAAATTCTACTCATATTGGGGTACACATATTTGACAAGAGTGCCCTTGAAATAGACTATCCTTTCAATGACCATATCATTGATGATTCAGTTGAAATTGAGCTACCTCCATGTCAGAAGAAAAGACTGAAGTCACCAATGTCATCTCGTCCAACAAGTGAGAAATCTAGAACTGGCATAGCTAGAGATGATGAAAGAAGCCCCAACCCGCAAGATTTGCTCCAGCATGTCCAAACTGAAGGTAGTCAATCTGAAGTAACAAACTTTGAGATGCCAATAATTGCATCTGTCAAGCAAGAGTTGGATGGTGGGAATGCAAGCAAAAGAACTTCACAGTTGATTACTCCCTGCCCTGGGACAACCGGAGCTCTAGAAGAAGCTAAGAAGTTCACCTCAGAAAATCCCTTTTTCATAATCAATATAAGGCAAAGTTATGTGAGCAAAAGCAGACCAAGTATACCAAATGCCTTCGTCAAAGAGTATGTAAAAGAGAACAAGCCGAATGTGACGATACAGTTTGGGAAGAAGTTGTGGCCTGTAACGTTGCTCCATTATCCAATAAAATGTATTGTCAGTTTCGCAGTTGGTTGGTCCCGTTTTGCTAAAGAAAACAAATTGCGAGTCGGAGATATTTGTATATTTGAACTTGTTAATAGAGAAGAGTATGTGTTTGATGTTCATATTTTCAGAGGCCACACATAG 906 0.3907 MSKMIPNNFTRRYGDGLPNPMFLKTPDGIEWKVYWTKHDGQILFEKGWKEFASYYSLDHGHLVVFEYEKNSTHIGVHIFDKSALEIDYPFNDHIIDDSVEIELPPCQKKRLKSPMSSRPTSEKSRTGIARDDERSPNPQDLLQHVQTEGSQSEVTNFEMPIIASVKQELDGGNASKRTSQLITPCPGTTGALEEAKKFTSENPFFIINIRQSYVSKSRPSIPNAFVKEYVKENKPNVTIQFGKKLWPVTLLHYPIKCIVSFAVGWSRFAKENKLRVGDICIFELVNREEYVFDVHIFRGHT 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi52g00007 301 CDD B3_DNA 4 80 IPR003340 GO:0003677
Gabi52g00007 301 MobiDBLite consensus disorder prediction 106 140 - -
Gabi52g00007 301 Gene3D - 2 83 IPR015300 -
Gabi52g00007 301 Pfam B3 DNA binding domain 4 81 IPR003340 GO:0003677
Gabi52g00007 301 Pfam B3 DNA binding domain 204 298 IPR003340 GO:0003677
Gabi52g00007 301 SUPERFAMILY DNA-binding pseudobarrel domain 4 82 IPR015300 -
Gabi52g00007 301 PANTHER B3 DOMAIN-CONTAINING 4 294 - -
Gabi52g00007 301 CDD B3_DNA 203 298 IPR003340 GO:0003677
Gabi52g00007 301 ProSiteProfiles B3 DNA-binding domain profile. 204 300 IPR003340 GO:0003677
Gabi52g00007 301 SUPERFAMILY DNA-binding pseudobarrel domain 198 298 IPR015300 -
Gabi52g00007 301 Gene3D - 187 300 IPR015300 -
Gabi52g00007 301 ProSiteProfiles B3 DNA-binding domain profile. 1 82 IPR003340 GO:0003677
Gabi52g00007 301 SMART B3_2 1 82 IPR003340 GO:0003677
Gabi52g00007 301 SMART B3_2 205 300 IPR003340 GO:0003677
Gabi52g00007 301 MobiDBLite consensus disorder prediction 124 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi52g00007 Gabi-Chr52 119620 123726 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi52g00007 5 298 B3 DNA Binding Superfamily AT3G18990 28.704 8.80e-30 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Gabi52g00007 B3 3.8e-14 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi52g00007 - - lang:109359484 288.885