Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi52g00006 ATGGCAACCTTGACTTCCCCTAACAACCAACCAAATAAGCATTCTTCATCGACTACGATCCGTTTCTTTAAGATTATTCTCAATAAAAGTCTGGAAAATGGAAATCTTATGATCCCAAACAATTTCACAAGGAGATATGGTGATGGTCTGCCAAACCCAATGTTTCTCAAAACCCCTGACGGCATTGAATGGAAAGTATATTGGACTAAACATGATGGTCAAATTTTGTTTGAAAAGGGATGGAAAGAATTTGCTAGTTATTACTCCCTAGATCATGGGCATTTAGTAGTGTTTGAATATGAGAAAAATTCTACTCATATTGGGGTACACATATTTGACAAGAGTGCCCTTGAAATAGACTATCCTTTCAATGACCATATCATTGATGATTCAGTTGAAATTGAGCTACCTCCATGTCAGAAGAAAAGACTGAAGTCACCAATGTCATCTCGTCCAACAAGTGAGAAATCTAGAACTGGCATAGCTAGAGATGATGAAAGAAGCCCCAACCCGCAAGATTTGCTCCAGCATGTCCAAACTGAAGGTAGTCAATCTGAAGTAACAAACTTTGAGATGCCAATAATTGCATCTGTCAAGCAAGAGTTGGATGGTGGGAATGCAAGCAAAAGAACTTCACAGTTGATTACTCCCTGCCCTGGGACAACCGGAGCTCTAGAAGAAGCTAAGAAGTTCACCTCAGAAAATCCCTTTTTCATAATCAATATAAGGCAAAGTTATGTGAGCAAAAGCAGACCAGTAAGTACAAAGTATACCAAATGCCTTCGTCAAAGAGTATGTAAAAGAGAACAAGCCGAATGTGACGATACAGTTTGGGAAGAAGTTGTGGCCTGTAACGTTGCTCCATTATCCAATAAAATGTATTGTCAGTTTCGCAGTTGGTTGGTCCCGTTTTGCTAA 918 0.3932 MATLTSPNNQPNKHSSSTTIRFFKIILNKSLENGNLMIPNNFTRRYGDGLPNPMFLKTPDGIEWKVYWTKHDGQILFEKGWKEFASYYSLDHGHLVVFEYEKNSTHIGVHIFDKSALEIDYPFNDHIIDDSVEIELPPCQKKRLKSPMSSRPTSEKSRTGIARDDERSPNPQDLLQHVQTEGSQSEVTNFEMPIIASVKQELDGGNASKRTSQLITPCPGTTGALEEAKKFTSENPFFIINIRQSYVSKSRPVSTKYTKCLRQRVCKREQAECDDTVWEEVVACNVAPLSNKMYCQFRSWLVPFC 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi52g00006 305 SMART B3_2 22 115 IPR003340 GO:0003677
Gabi52g00006 305 Gene3D - 14 116 IPR015300 -
Gabi52g00006 305 MobiDBLite consensus disorder prediction 139 173 - -
Gabi52g00006 305 ProSiteProfiles B3 DNA-binding domain profile. 21 115 IPR003340 GO:0003677
Gabi52g00006 305 SUPERFAMILY DNA-binding pseudobarrel domain 16 115 IPR015300 -
Gabi52g00006 305 MobiDBLite consensus disorder prediction 157 171 - -
Gabi52g00006 305 CDD B3_DNA 21 113 IPR003340 GO:0003677
Gabi52g00006 305 PANTHER B3 DOMAIN-CONTAINING 12 201 - -
Gabi52g00006 305 Pfam B3 DNA binding domain 22 114 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi52g00006 Gabi-Chr52 119570 123667 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi52g00006 8 134 B3 DNA Binding Superfamily AT4G01580 35.115 1.11e-18 80.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Gabi52g00006 B3 1.5e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi52g00006 - - lang:109359484 231.106