Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi52g00005 ATGGCAACCTTGACTTCCCCTAACAACCAACCAAATAAGCATTCTTCATCGACTACGATCCGTTTCTTTAAGATTATTCTCAATAAAAGTCTGGAAAATGGAAATCTTATGATCCCAAACAATTTCACAAGGAGATATGGTGATGGTCTGCCAAACCCAATGTTTCTCAAAACCCCTGACGGCATTGAATGGAAAGTATATTGGACTAAACATGATGGTCAAATTTTGTTTGAAAAGGGATGGAAAGAATTTGCTAGTTATTACTCCCTAGATCATGGGCATTTAGTAGTGTTTGAATATGAGAAAAATTCTACTCATATTGGGGTACACATATTTGACAAGAGTGCCCTTGAAATAGACTATCCTTTCAATGACCATATCATTGATGATTCAGTTGAAATTGAGCTACCTCCATGTCAGAAGAAAAGACTGAAGTCACCAATGTCATCTCGTCCAACAAGTGAGAAATCTAGAACTGGCATAGCTAGAGATGATGAAAGAAGCCCCAACCCGCAAGATTTGCTCCAGCATGTCCAAACTGAAGGTAGTCAATCTGAAGTAACAAACTTTGAGATGCCAATAATTGCATCTGTCAAGCAAGAGTTGGATGGTGGGAATGCAAGCAAAAGAACTTCACAGTTGATTACTCCCTGCCCTGGGACAACCGGAGCTCTAGAAGAAGCTAAGAAGTTCACCTCAGAAAATCCCTTTTTCATAATCAATATAAGGCAAAGTTATGTGAGCAAAAGCAGACCAAGTATACCAAATGCCTTCGTCAAAGAGTATGTAAAAGAGAACAAGCCGAATGTGACGATACAGTTTGGGAAGAAGTTGTGGCCTGTAACGTTGCTCCATTATCCAATAAAATGTATTGTCAGTTTCGCAGTTGGTTGGTCCCGTTTTGCTAAAGAAAACAAATTGCGAGTCGGAGATATTTGTATATTTGAACTTGTTAATAGAGAAGAGTATGTGTTTGATGTTCATATTTTCAGAGGCCACACATAG 1005 0.3881 MATLTSPNNQPNKHSSSTTIRFFKIILNKSLENGNLMIPNNFTRRYGDGLPNPMFLKTPDGIEWKVYWTKHDGQILFEKGWKEFASYYSLDHGHLVVFEYEKNSTHIGVHIFDKSALEIDYPFNDHIIDDSVEIELPPCQKKRLKSPMSSRPTSEKSRTGIARDDERSPNPQDLLQHVQTEGSQSEVTNFEMPIIASVKQELDGGNASKRTSQLITPCPGTTGALEEAKKFTSENPFFIINIRQSYVSKSRPSIPNAFVKEYVKENKPNVTIQFGKKLWPVTLLHYPIKCIVSFAVGWSRFAKENKLRVGDICIFELVNREEYVFDVHIFRGHT 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi52g00005 334 Gene3D - 220 333 IPR015300 -
Gabi52g00005 334 Pfam B3 DNA binding domain 237 331 IPR003340 GO:0003677
Gabi52g00005 334 Pfam B3 DNA binding domain 22 114 IPR003340 GO:0003677
Gabi52g00005 334 MobiDBLite consensus disorder prediction 139 173 - -
Gabi52g00005 334 ProSiteProfiles B3 DNA-binding domain profile. 21 115 IPR003340 GO:0003677
Gabi52g00005 334 SMART B3_2 22 115 IPR003340 GO:0003677
Gabi52g00005 334 SMART B3_2 238 333 IPR003340 GO:0003677
Gabi52g00005 334 MobiDBLite consensus disorder prediction 157 171 - -
Gabi52g00005 334 SUPERFAMILY DNA-binding pseudobarrel domain 231 331 IPR015300 -
Gabi52g00005 334 ProSiteProfiles B3 DNA-binding domain profile. 237 333 IPR003340 GO:0003677
Gabi52g00005 334 Gene3D - 14 116 IPR015300 -
Gabi52g00005 334 PANTHER B3 DOMAIN-CONTAINING 12 327 - -
Gabi52g00005 334 SUPERFAMILY DNA-binding pseudobarrel domain 16 115 IPR015300 -
Gabi52g00005 334 CDD B3_DNA 21 113 IPR003340 GO:0003677
Gabi52g00005 334 CDD B3_DNA 236 331 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi52g00005 Gabi-Chr52 119570 123726 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi52g00005 22 331 B3 DNA Binding Superfamily AT3G18990 28.235 8.65e-33 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Gabi52g00005 B3 4.6e-14 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi52g00005 - - lang:109359484 310.842