Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi52g00004 ATGGCAACCTTGACTTCCCCTAACAACCAACCAAATAAGCATTCTTCATTTACTACAATCCGTTTCTTTAAGATTATTCTCAGTAAAAGTCTGGAAGATGGAAATCTTAAGATCCCAAACAATTTCACAAGGAGATATGGTGGTGGTCTGCAAAACCCAATGTTTCTCAAAACCCCAGACGGCATTGAATGGAAAGTATATTGGACTAAACATGATGGTCAAATTTTGTTTGAAAAGGGATGGAAAGAATTTGCTAGTTATTACTCCCTAGATCATGGGCATTTAGTAGTGTTTGAATATGAGAAAAATTCTAGTCATATTGAGGTACACATATTTGACATGAGTGCCCTTGAAATAGACTATCCTTTCCATGACCATACCATTGATGATTCAGTGGAAATTTTGAATGAGCAACCTCCATGTCAGAAGAAAAGACTGAAATCACCAATGTCATCTTGTCCAACAAGTAAGAAATCGAGAACTGGCATAGCTAGAGAAGATGAAAGAAGCCTCAATCCGCAAAATTTTCTCCCGCATGTCCAAACTAAAGGTAGTCAATCTGAAGTAACAAACTCTGAGATGCCAATAATTGCATCTGTCAAGCAAGAGTTGGATGGTGGGAATGCAAGCAAAAGAACTTCACTGTTGATTACTCCCTGCCCCGGGACAACCGGATCTCTAAAAGAAGTTATGAAGTTCACCTCTGAAAATCCCTTTTTCATAATCAATATATGGCCAAGTTATGTGAGGAAAAGCAGAGCAAGTATACCAAGTGCCTTCGCCAGGAAGTATGTACAGAAGAACAAGCAGAATGTGATGATACAGTTTGGGAAGAAGTTGTGGCCTGTAAGGTTGCTCTATTATCCAATAAATTCTGTTGTCAATTTTGCCGCTGGTTGGAACCTTTTTGCTAAAGAAAGCAAATTGCAAGTTGGAGATATTTGTATCTTTGAACTCATTAATAGAGAAGAGTATGTATTTGATGTTCATATTTTCAGAGGCCACACATAG 1011 0.3808 MATLTSPNNQPNKHSSFTTIRFFKIILSKSLEDGNLKIPNNFTRRYGGGLQNPMFLKTPDGIEWKVYWTKHDGQILFEKGWKEFASYYSLDHGHLVVFEYEKNSSHIEVHIFDMSALEIDYPFHDHTIDDSVEILNEQPPCQKKRLKSPMSSCPTSKKSRTGIAREDERSLNPQNFLPHVQTKGSQSEVTNSEMPIIASVKQELDGGNASKRTSLLITPCPGTTGSLKEVMKFTSENPFFIINIWPSYVRKSRASIPSAFARKYVQKNKQNVMIQFGKKLWPVRLLYYPINSVVNFAAGWNLFAKESKLQVGDICIFELINREEYVFDVHIFRGHT 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi52g00004 336 Gene3D - 223 335 IPR015300 -
Gabi52g00004 336 SUPERFAMILY DNA-binding pseudobarrel domain 233 333 IPR015300 -
Gabi52g00004 336 Gene3D - 15 116 IPR015300 -
Gabi52g00004 336 PANTHER B3 DOMAIN-CONTAINING 12 329 - -
Gabi52g00004 336 CDD B3_DNA 238 333 IPR003340 GO:0003677
Gabi52g00004 336 SMART B3_2 22 115 IPR003340 GO:0003677
Gabi52g00004 336 SMART B3_2 239 335 IPR003340 GO:0003677
Gabi52g00004 336 Pfam B3 DNA binding domain 239 333 IPR003340 GO:0003677
Gabi52g00004 336 Pfam B3 DNA binding domain 22 113 IPR003340 GO:0003677
Gabi52g00004 336 MobiDBLite consensus disorder prediction 174 189 - -
Gabi52g00004 336 MobiDBLite consensus disorder prediction 143 189 - -
Gabi52g00004 336 CDD B3_DNA 21 113 IPR003340 GO:0003677
Gabi52g00004 336 SUPERFAMILY DNA-binding pseudobarrel domain 18 115 IPR015300 -
Gabi52g00004 336 ProSiteProfiles B3 DNA-binding domain profile. 239 335 IPR003340 GO:0003677
Gabi52g00004 336 ProSiteProfiles B3 DNA-binding domain profile. 21 115 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi52g00004 Gabi-Chr52 91546 98363 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi52g00004 22 333 B3 DNA Binding Superfamily AT3G18990 29.532 1.72e-36 133
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Gabi52g00004 B3 3.1e-13 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi52g00004 - - lang:109359484 324.709