Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi52g00002 ATGTACCAAAGAGTTACCGAGTTGAACCTAGAAGGTTATCAATTACGTGGGCTCATATCTCCACTAGTTGGCAATCTCTCTTTTCTTATAAACCTCAATCTTGGAAACAACAGCTTCTACGGAAAAATCCCACAAGAAATGAGTCGATTGTTACAATTGCAGCAACTCTCTCTCATCAACAACTCGTTAACTGGGGGAATTCCTACAAACTTGACCAGTTGCTCTGATCTCAAAGAGATACTCTTATCTGGGAACAATCTGAGTGGCAAAATACCAATTGAAATTTCCTCTCTTAGAAAACTTCAACTTTTTGTTGTTCAAGAAAACAATTTAATAGGAGGAGTCCCACCCTTCATAGGGAATCTTTCATCCCTAACAGTTCTCTTGATGGGTGATAATAACTTAGAGGGAGATATTCCAAATGAAATATGCCTCCTCAAAAACTTGACAGCTATATCAGTTTCTGTTAACAAAATGTCGGGTACATTTCCATCTTGTCTTTACAATATGTCATCTCTTACTTTAATCTATGTTGGACATAACCAATTTAATGGCTCTCTTCCACCCAACATGTTTCTCACCCTTCCCAATCTCCAAGTATTTAAAATTGCTAGGAATCAAATCTCAGGTCCAATCCCCACTTCCATTGCAAATGCTTCTGCCATTCAATTACTTAATATCGCTCATAACAATTTCATGGGCCAAGTTCCGAATATAGGGAAGCTAATAGATCTGTATTACCTAGGTTTGTCTGAAAACAATTTAGGTGACAATTTAACTACAGATTTGGAGTTTTTAAAATCATTAACAAACTGTAGTAAGTTGCAACATTTTGGTATAGCCTACAATAAGTTTGGAGGTCGTTTGCCAAATTGCTTGGGCAATTTATCCTCCCAACTTAATCAATTATATCTTGGGGGTAATCATATATCAGGACAAATTCCAGCAGAATTAGGAAATCTATTAAGCTTAATTATCTTGACCATGGAAAAGAACCGTTTTGAGGGGATTATTCCATCTTCTTTTGCAAAGTTTCACAATATGCAACGTTTAAATTTGGGTGGAAACAAGCTGTTAGGAGATATACCACCCTTCATAGGCAACCTCAGTTTGTTATATTATTTGGCTTTAGACCAAAATTTGTTAGAAGGAAATATTCCTACAAGTATAGGGAACTGTCAAATGTTGCAAGTTCTAGACCTTTCCCGAAATAACCTTAGAGGAACCATACCCTCAGAGATTTTTAGTCTTTCCTCTTTAACAAATTTACTAGACTTGTCACACAACTCATTGAGTGGTAGTCTACCATATGAAGTGGGCCAATTGAAAAATATTGAAGTGTTAAATGTCTCTGAGAATCATCTGTGCGGTAATATTCCTGGAACAATTGGAGAATGCTCAAGCTTGGAGTACCTTTATTTGCAGGGGAATTCCTTCCATGGAATCATACCATCCTCTTTGGCTTCACTAAAAGGTCTTCGATATTTAGACCTATCACGAAATCACTTGTCTGGATCAATTCCTGATGTTCTGCAGAATATTTCTTTCTTAGAATACTTAAATATATCATTTAACATGTTGGATGGTGAGGTACCAACTGAAGGTGTCTTTCGAAATGCAAGTGAGTTAGCAGTGACTAGAAACAACAAGCTTTGTGGAGGTGTTTCAGAGCTGCATCTACCCCTATGCCCTGTCAAAGGTGAGAAACATGCACATCACCACAATTTCAACTTGAAGGTTGCGATGTTTAGTGTATTCATTTCTTTTCTCATACTATTATTTATTCTCACTTTCTACTGGATGAGGAAAAGAAGTAAAAAACCATCTTCTAATTCACCAACAATTGACCAGCTGGCCAAGGTTTCATACCAAAACCTACACCGTGGAACGGATGGGTTCTCAATAAGAAACTTGATAGGACTCGGAAGTTTTGGCTCTGTGTACAAAGGAACTATTGAGCCAGAAGACACAATTGTTGCTATAAAGGTCCTAAATCTTCAAAAGAATGGAGCTCATAAGAGTTTCATTGCTGAATGCAATGCACTCAAAAATATTAGGCATCGAAATCTAGTTAAGATTTTAACATGTTGTTCCAGCACAGATTTCAAAGGTCAAGAATTTAAAGCTCTAGTTTTTGAGCATGTGACAAATGGAAGCTTAGAAAGTTGGTTGCATCCGGCAACAGAAATAGCAGATCAACCTAGATCACTGAACCTTGAGGAAAGGTTAAATATTATTACTGATGTTGCTTCAGCATTTCATTATCTTCACTACGAATGTGAGCAGGCTGTCATCCATTGTGATTTGAAGCCTAGCAATGTTCTTCTTGATGATTGCATGGTAGCTCATGTGAGTGATTTTGGCCTAGCAAGATTACTCTCAAGTGTTGGAGTATCTCTGATGCAAAGTAGCACAATTACAATAAAAGGGACTGTTGGTTATGCTCCTCCAGAGTATGGAATGGGTTCCGAGGTGTCAATTGAAGGCGATATGTATAGTTTTGGAATTCTGATTTTACAAATGTTAACTGGAAGAAAACCCACAGATGAAATGTTTAAAGATGGTCATACTCTCCACAATTATGTTAAAATTACAATATCCAATAATTTTGTGGAGATTGTAGACCTAACTATTCTCCATAATGAATTAGAACGGACTACTGATAATAAGAACCTGGGTCTTGTGCATCCGAGTGTAGAGACATGTTTACTCTCTCTTTTTAGGATTGCACTTGCTTGTTCAATGGAATCACCAAAAGAAAGAATGAATATGATTAATGTCACCAAGGAACTTAATCTGATCAAATCATTTTTCCCTTATGAGATTTAG 2829 0.369 MYQRVTELNLEGYQLRGLISPLVGNLSFLINLNLGNNSFYGKIPQEMSRLLQLQQLSLINNSLTGGIPTNLTSCSDLKEILLSGNNLSGKIPIEISSLRKLQLFVVQENNLIGGVPPFIGNLSSLTVLLMGDNNLEGDIPNEICLLKNLTAISVSVNKMSGTFPSCLYNMSSLTLIYVGHNQFNGSLPPNMFLTLPNLQVFKIARNQISGPIPTSIANASAIQLLNIAHNNFMGQVPNIGKLIDLYYLGLSENNLGDNLTTDLEFLKSLTNCSKLQHFGIAYNKFGGRLPNCLGNLSSQLNQLYLGGNHISGQIPAELGNLLSLIILTMEKNRFEGIIPSSFAKFHNMQRLNLGGNKLLGDIPPFIGNLSLLYYLALDQNLLEGNIPTSIGNCQMLQVLDLSRNNLRGTIPSEIFSLSSLTNLLDLSHNSLSGSLPYEVGQLKNIEVLNVSENHLCGNIPGTIGECSSLEYLYLQGNSFHGIIPSSLASLKGLRYLDLSRNHLSGSIPDVLQNISFLEYLNISFNMLDGEVPTEGVFRNASELAVTRNNKLCGGVSELHLPLCPVKGEKHAHHHNFNLKVAMFSVFISFLILLFILTFYWMRKRSKKPSSNSPTIDQLAKVSYQNLHRGTDGFSIRNLIGLGSFGSVYKGTIEPEDTIVAIKVLNLQKNGAHKSFIAECNALKNIRHRNLVKILTCCSSTDFKGQEFKALVFEHVTNGSLESWLHPATEIADQPRSLNLEERLNIITDVASAFHYLHYECEQAVIHCDLKPSNVLLDDCMVAHVSDFGLARLLSSVGVSLMQSSTITIKGTVGYAPPEYGMGSEVSIEGDMYSFGILILQMLTGRKPTDEMFKDGHTLHNYVKITISNNFVEIVDLTILHNELERTTDNKNLGLVHPSVETCLLSLFRIALACSMESPKERMNMINVTKELNLIKSFFPYEI 942
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi52g00002 942 PRINTS Leucine-rich repeat signature 490 503 - -
Gabi52g00002 942 PRINTS Leucine-rich repeat signature 396 409 - -
Gabi52g00002 942 ProSitePatterns Serine/Threonine protein kinases active-site signature. 764 776 IPR008271 GO:0004672|GO:0006468
Gabi52g00002 942 SUPERFAMILY Protein kinase-like (PK-like) 606 932 IPR011009 -
Gabi52g00002 942 FunFam LRR receptor-like serine/threonine-protein kinase EFR 266 569 - -
Gabi52g00002 942 SMART serkin_6 633 899 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi52g00002 942 Gene3D Phosphorylase Kinase; domain 1 614 714 - -
Gabi52g00002 942 SUPERFAMILY L domain-like 3 255 - -
Gabi52g00002 942 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 1 265 - -
Gabi52g00002 942 PANTHER OS04G0122200 PROTEIN 5 155 - -
Gabi52g00002 942 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 715 941 - -
Gabi52g00002 942 Pfam Protein kinase domain 635 863 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi52g00002 942 ProSiteProfiles Protein kinase domain profile. 633 899 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi52g00002 942 FunFam LRR receptor-like serine/threonine-protein kinase EFR 604 714 - -
Gabi52g00002 942 Pfam Leucine rich repeat 172 232 IPR001611 GO:0005515
Gabi52g00002 942 Pfam Leucine rich repeat 468 527 IPR001611 GO:0005515
Gabi52g00002 942 Gene3D Ribonuclease Inhibitor 1 269 IPR032675 -
Gabi52g00002 942 Gene3D Ribonuclease Inhibitor 270 563 IPR032675 -
Gabi52g00002 942 SUPERFAMILY L domain-like 299 553 - -
Gabi52g00002 942 Gene3D Transferase(Phosphotransferase) domain 1 715 937 - -
Gabi52g00002 942 ProSitePatterns Protein kinases ATP-binding region signature. 639 662 IPR017441 GO:0005524
Gabi52g00002 942 SMART LRR_typ_2 442 466 IPR003591 -
Gabi52g00002 942 SMART LRR_typ_2 122 146 IPR003591 -
Gabi52g00002 942 SMART LRR_typ_2 490 513 IPR003591 -
Gabi52g00002 942 SMART LRR_typ_2 321 344 IPR003591 -
Gabi52g00002 942 SMART LRR_typ_2 345 369 IPR003591 -
Gabi52g00002 942 SMART LRR_typ_2 50 74 IPR003591 -
Gabi52g00002 942 SMART LRR_typ_2 170 194 IPR003591 -
Gabi52g00002 942 SMART LRR_typ_2 393 417 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi52g00002 Gabi-Chr52 70269 73648 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi52g00002 3 938 Receptor kinase-like Gene Family AT3G47570 46.097 0.0 792
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Gabi52g00002 Pkinase 1.2e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi52g00002 - - gmx:100792724 1300.8