Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi52g00001 ATGGATTCTTTCCTCTCCACTGAAAAATCTCTCCCACCGCCCGGAATCCCCAACCCCGCCGGTTCTTCCGCCACCGTTACCGCCACAATCCAAACCCCAATACTCACCCCCAAGCTCGAACCTTTCGACGAATGGCTCGCCACCCAAATCTCACAAGAACCCCACCAATCCAAGCTCTCAAATGGGTCTCTCAACCTCAACATCTTCAGTGAAGAAACCCTAGGTGGGTCCGCAGGGGATAACAGCAACAACAATGGCAACGGAAGCGGCAACTTGTACTCTGAGTTTGACCGAGTCTCGAAGCAATTCCTGAACGACGTCATTTCGGACCCGGATTCGAAGGCAATCGTGCCGGTATCGGTGCCGGAGAATAACATTTCTCCGCCGCCGCCGGCGCGGCGGCGGTGGAAGGAGCTGGTGAGGATGGTGGATTTCGGGATGAAGGAGATGCGAAATTTTCGGTCTGAGATTCGGAGGACGAGGATGACATACGACGCGCTGCGCGTGATGATGTCAGTGGAGGATGAGAGGAAGGTGGTGGATTCTGGGAGGAAGAGGAGTGATTTGAAGGCTTCTAAACTGATGAGGAGGAGTGGTTTGTGTCTGAATCGTGATAAGAGGATTGTGGGTGCAATACCTGGTATTTGCATTGGTGATGTGTTCCTTTATAGGATGGAATTGTATGTGGTTGGGTTGCACGGTCAGCCACAAGCTGGGATTGATTATCTTCCCTCTCGCATGAGTTCAAATGGTGAACCAATTGCTACAAGTGTTATAGTCTCTGGTGGGTACGAGGATGATTTGGATAAAGATGATGTTATCATCTATTCGGGTCATGGAGGCCAAGATAAGCATTCAAAGCAGGTTTTTGATCAGAAGTTGGAAGGAGGGAACCTTGCAATGGAGAGAAGCATGCGCTATGGGATTGAAGTGAGGGTCATTCGAGGGGTTCGGTTTGAGGGAACAACCTCAACTTCAGGTAAGGTGTATGTATATGATGGCTTATATAGAATCCTTGAATGCTGGTTTGATGTTGGTAAGTCTGGGTTTGGTGTATATAAGTATAAGCTAGTGAGGATTGATGGACAGGCTAAGATGGGTAGTACAGTTATGACAGACGCTGATAGGCTTAGGAAAGATCCATTGAGTATTAAACCCATGTGTTGTTTTTCTCTTGATCTTTCGAGCGGGATGGAGAAGTTTCCCGTTCGTGTTTTTAATGATATAGACCGAGCTCATGACCCTCTTCGTTATGAGTATCTTACTAAGACCAATTTTCCGCAGTTTGTGTTTCATCAAACTGGGAGATCTGCGGGTTGTGAGTGTGTAGATGGTTGTGTTGATGGATGCTTTTGTGCTTTGAAGAATGGAGGCGAGTTTCCTTATACTCAAAGTGGGGTTCTCGTGAGAGGGAAGCCTGTAATTTTTGAATGTGGCCCTTTTTGCCAATGTCCTCCTCATTGTCGGAATCGTGTCACACAAAAGGGGCTGAAAAATAGGTTGGAAGTGTTTAGATCTAGGGAAACTGGATGGGGAGTTAGGTCCTTGGACCTTATTCAAGCGGGTGCTTTTATCTGTGAGTTCACAGGGGTTGTTCTGACCAGGGAGCAAGCACAAGTTTTGTCAATGAATGGTGATTCGTTGGTATATCCAAATCGGTTTTCTAATAGGTGGGAAGAATGGGGGAATTTATCTCTGATAGATCCCAATTATGTTCGTCCATCATATCCATCAATTCCTCCTTTAGATTTCGCTATGGATGTGTCCGGAATGAGGAATGTTGCTTGCTATATGAGTCATAGTTCAAGTCCGAATGTGTTGGTTCAGTTTGTTCTGTATGATCACAATAATTTGATGTTCCCTCGCCTTATGCTATTTGCAATGGAGAACATCCCTCCAATGAGAGAGCTCAGCCTTGATTATGGGGTAGCTGATGAGTGGACAGGCAAGCTCTCTATATGTAACTGA 1968 0.4649 MDSFLSTEKSLPPPGIPNPAGSSATVTATIQTPILTPKLEPFDEWLATQISQEPHQSKLSNGSLNLNIFSEETLGGSAGDNSNNNGNGSGNLYSEFDRVSKQFLNDVISDPDSKAIVPVSVPENNISPPPPARRRWKELVRMVDFGMKEMRNFRSEIRRTRMTYDALRVMMSVEDERKVVDSGRKRSDLKASKLMRRSGLCLNRDKRIVGAIPGICIGDVFLYRMELYVVGLHGQPQAGIDYLPSRMSSNGEPIATSVIVSGGYEDDLDKDDVIIYSGHGGQDKHSKQVFDQKLEGGNLAMERSMRYGIEVRVIRGVRFEGTTSTSGKVYVYDGLYRILECWFDVGKSGFGVYKYKLVRIDGQAKMGSTVMTDADRLRKDPLSIKPMCCFSLDLSSGMEKFPVRVFNDIDRAHDPLRYEYLTKTNFPQFVFHQTGRSAGCECVDGCVDGCFCALKNGGEFPYTQSGVLVRGKPVIFECGPFCQCPPHCRNRVTQKGLKNRLEVFRSRETGWGVRSLDLIQAGAFICEFTGVVLTREQAQVLSMNGDSLVYPNRFSNRWEEWGNLSLIDPNYVRPSYPSIPPLDFAMDVSGMRNVACYMSHSSSPNVLVQFVLYDHNNLMFPRLMLFAMENIPPMRELSLDYGVADEWTGKLSICN 655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi52g00001 655 Pfam SET domain 510 642 IPR001214 GO:0005515
Gabi52g00001 655 SUPERFAMILY SET domain 384 654 IPR046341 -
Gabi52g00001 655 Gene3D SET domain 369 655 IPR046341 -
Gabi52g00001 655 Gene3D - 207 368 IPR036987 -
Gabi52g00001 655 SUPERFAMILY PUA domain-like 192 372 IPR015947 -
Gabi52g00001 655 ProSiteProfiles YDG domain profile. 210 359 IPR003105 -
Gabi52g00001 655 ProSiteProfiles Pre-SET domain profile. 438 496 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Gabi52g00001 655 MobiDBLite consensus disorder prediction 1 24 - -
Gabi52g00001 655 ProSiteProfiles SET domain profile. 499 642 IPR001214 GO:0005515
Gabi52g00001 655 Pfam Pre-SET motif 395 491 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Gabi52g00001 655 SMART preset_2 391 483 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Gabi52g00001 655 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 58 655 IPR025794 GO:0016571
Gabi52g00001 655 Pfam SAD/SRA domain 209 363 IPR003105 -
Gabi52g00001 655 SMART G9a_1 205 363 IPR003105 -
Gabi52g00001 655 SMART set_7 499 648 IPR001214 GO:0005515
Gabi52g00001 655 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 110 643 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi52g00001 Gabi-Chr52 23090 27622 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi52g00001 162 644 Su(var)3-9 homologs AT5G04940 40.984 3.04e-110 345
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Gabi52g00001 SAD_SRA 6.3e-47 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi52g00001 K11420 - gmx:100804592 936.791