Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi529g00005 ATGGGCCTCTCAAGTCTCCCAGCACCATCTGAAGGAATGTTATGTGTACTTCTAGTAAATACTGCCTTGTCTATATCCTTATTTAAAGCCATTGTTAGGACAATCCTACACGTTGTTGGTATCCGTGTTTCATCATCCTCCTCCATTTCATCTCCACCACAAGATATCACTCAAAACCCACCAGAGTCATTTGAATTCCTTCTCAGTCCCTCAGAGGGTTTCCTTGAGGAGTTTAGAAGCAGGACACCAACACTTAGGTTTGACAGTGTGTGTAGCTATAAACAACATGAGCATGATTGTACTGTGTGTCTCACTCAGTTCGAACCAGAATCAGAGATAAACCGTTTGTCTTGTGGCCATCTCTTCCATAAAGTGTGCTTGGAGAAGTGGTTGGACTATTGGAACATTACATGCCCACTTTGCAGGACTCCCTTAATGCCTGAAGATGACACATCTTGCTTTTGGTAA 468 0.4295 MGLSSLPAPSEGMLCVLLVNTALSISLFKAIVRTILHVVGIRVSSSSSISSPPQDITQNPPESFEFLLSPSEGFLEEFRSRTPTLRFDSVCSYKQHEHDCTVCLTQFEPESEINRLSCGHLFHKVCLEKWLDYWNITCPLCRTPLMPEDDTSCFW 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi529g00005 155 PANTHER - 1 153 IPR044249 -
Gabi529g00005 155 SMART ring_2 100 141 IPR001841 -
Gabi529g00005 155 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 69 147 IPR013083 -
Gabi529g00005 155 ProSiteProfiles Zinc finger RING-type profile. 100 142 IPR001841 -
Gabi529g00005 155 Pfam Ring finger domain 99 142 IPR001841 -
Gabi529g00005 155 SUPERFAMILY RING/U-box 93 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi529g00005 Gabi-Chr529 136475 138663 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi529g00005 1 149 C3H Transcription Factor Family AT2G04240 62.987 1.33e-58 177
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi529g00005 K16285 - gmx:100786803 263.077