Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi529g00004 ATGGCTGTGGTGAAGGATCATGACACTGATGAAATTGGAAACGAGTTTCCACTAGGAATGCGTGTTCTTGCTATTGATGATGACCCATTGAGCCTCTTCACTTTGCAGACTTTGCTCAGACGGTGTCAATATGATGTAACCGTGAAAACAGATGCAATATCAGCACTGAAGTTGTTGAAAGAAAAGAAAAGCAAGTTTGACCTGATAATCACCGATGTCCATATGTCAGAAATGGATGGATTTAAGTTGCTTGAACTCATGCAACGTTGGAATTTGATGGACCAACCTGTCATATTGTCGTCTGAAGATAATGACCGAAAGATAGTCATGAAAGGAATCAAACTTGGAGCTTGTGCTTTTTTGGCAAAACCTCTTAGAATCGAGGAGCTGCAAAACATATGGCAGCATGTACTTAGGAGGAAGAATATTGTCCCAAAGAAGCATGATAAAGATTACCACAATGACTATGAGGAGCCCAAGATACGTCATAACAAAATGGATCCCTCAACATCAACATCAACCCAGAAGAAGTCTCGAGTTATTTGGACCGAAGAGCTTCATCATAGTTTTGTTGCTGCTGTTATTAAGCTAGGGGTTGACAAGGCAGTACCTAGAAAAATTCTTGAATTGATGAATGTTGAGAAGCAACTTACTAGGGAGAATGTGGCCAGCCATCTCCAGAGATATAGACTTCGTCTGAAAAGGATTAGCTCTAAGTCAACCCAACAAGTTGAATCCTTGCAATGGGGGAATCAGAGTAGCATTCCAAATACTTCTGGGGAAACAAATTTTCAAGGAAGGGATCACCAAAATCAGAATGACACTAACCCTTCAGATGTTATCTGTAGCTCAATAGACTCCCAGATTCCCTTGAATGGTGTTGTTGATTCAGAAGAGCATAGTCCAATAAACTCAACTTTCAATGGAGATTGGGACTTTGATTTTTTGTGA 951 0.4027 MAVVKDHDTDEIGNEFPLGMRVLAIDDDPLSLFTLQTLLRRCQYDVTVKTDAISALKLLKEKKSKFDLIITDVHMSEMDGFKLLELMQRWNLMDQPVILSSEDNDRKIVMKGIKLGACAFLAKPLRIEELQNIWQHVLRRKNIVPKKHDKDYHNDYEEPKIRHNKMDPSTSTSTQKKSRVIWTEELHHSFVAAVIKLGVDKAVPRKILELMNVEKQLTRENVASHLQRYRLRLKRISSKSTQQVESLQWGNQSSIPNTSGETNFQGRDHQNQNDTNPSDVICSSIDSQIPLNGVVDSEEHSPINSTFNGDWDFDFL 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi529g00004 316 Gene3D - 20 157 - -
Gabi529g00004 316 PANTHER TWO-COMPONENT RESPONSE REGULATOR 20 258 IPR045279 GO:0009736
Gabi529g00004 316 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 174 234 IPR017930 -
Gabi529g00004 316 CDD REC_typeB_ARR-like 22 138 - -
Gabi529g00004 316 Pfam Response regulator receiver domain 22 132 IPR001789 GO:0000160
Gabi529g00004 316 MobiDBLite consensus disorder prediction 149 175 - -
Gabi529g00004 316 MobiDBLite consensus disorder prediction 149 165 - -
Gabi529g00004 316 SUPERFAMILY CheY-like 19 146 IPR011006 -
Gabi529g00004 316 ProSiteProfiles Response regulatory domain profile. 21 138 IPR001789 GO:0000160
Gabi529g00004 316 NCBIfam myb-like DNA-binding domain, SHAQKYF class 177 232 IPR006447 GO:0003677
Gabi529g00004 316 FunFam Two-component response regulator 173 237 - -
Gabi529g00004 316 SMART REC_2 20 134 IPR001789 GO:0000160
Gabi529g00004 316 SUPERFAMILY Homeodomain-like 174 235 IPR009057 -
Gabi529g00004 316 MobiDBLite consensus disorder prediction 242 282 - -
Gabi529g00004 316 Pfam Myb-like DNA-binding domain 182 230 IPR001005 -
Gabi529g00004 316 Gene3D - 173 237 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi529g00004 Gabi-Chr529 108525 110025 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi529g00004 11 244 Response Regulator Gene Family AT4G31920 52.400 7.33e-74 235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Gabi529g00004 Response_reg 1.5e-21 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi529g00004 K14491 - rcu:8274205 253.832