Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi528g00003 ATGGATTTTGACTCTCTTATCTCCCAAAACCAAAACCTTCACTTCTTCCCTGAAAATTCCTTTGTTTCTGAGGACCCTTTCTCATGGGACATCAAAGACTTCATTTTCTTCAACAATTACAACAACACCCTTCCCTTCAACTTCAGCGAACACTCACAATCACAATCACAATCGAACAAATCTTCAGGGTCTCTGGGTAGTGTTGAGTCACAAGAAGTCTCATCCAATACAACCGATCATGCACAAGTGAGAGAAACTCGAGCATCACCACACAAGTTCAGAGGAGTAAGGAGGAGGCCATGGGGGAAATTCGCGGCGGAGATAAGGGATTCAACAAGAAATGGGGTGAGAGTGTGGATTGGAACGTTTGACACAGCAGAGGAAGCAGCTTTGGCTTATGATCAAGCAGCATTCTCAACAAGGGGTTCATTGGCAGTGCTGAATTTCCCACAGGAAGTGGTGAAGGAGTCCCTCAAAGACATGGCTAATAATAAGGCTTTGGAAGAAGGTTCCTCCCCTGTGTTGGCACTCAAGAGAAAACACTCCATGAGAAGAAGAAGAAACTCAAATTCTACTAAGCCTAGTAAAAAGAAAACCAAGAGCCATGACATGGATCAGTTACAGATTAGTACTTCTCAAAATGTGCTGGTCTTTGAAGATTTGGGTGTTGAATATCTAGAGCAACTTTTGAGCATGACTTCATAA 705 0.4298 MDFDSLISQNQNLHFFPENSFVSEDPFSWDIKDFIFFNNYNNTLPFNFSEHSQSQSQSNKSSGSLGSVESQEVSSNTTDHAQVRETRASPHKFRGVRRRPWGKFAAEIRDSTRNGVRVWIGTFDTAEEAALAYDQAAFSTRGSLAVLNFPQEVVKESLKDMANNKALEEGSSPVLALKRKHSMRRRRNSNSTKPSKKKTKSHDMDQLQISTSQNVLVFEDLGVEYLEQLLSMTS 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi528g00003 234 Pfam AP2 domain 92 142 IPR001471 GO:0003700|GO:0006355
Gabi528g00003 234 MobiDBLite consensus disorder prediction 178 195 - -
Gabi528g00003 234 PANTHER DNA-BINDING DOMAIN 54 230 IPR044808 GO:0003700|GO:0009873
Gabi528g00003 234 PRINTS Ethylene responsive element binding protein signature 116 132 IPR001471 GO:0003700|GO:0006355
Gabi528g00003 234 PRINTS Ethylene responsive element binding protein signature 93 104 IPR001471 GO:0003700|GO:0006355
Gabi528g00003 234 MobiDBLite consensus disorder prediction 49 94 - -
Gabi528g00003 234 FunFam Ethylene-responsive transcription factor 2 91 151 - -
Gabi528g00003 234 Gene3D AP2/ERF domain 91 152 IPR036955 GO:0003700|GO:0006355
Gabi528g00003 234 SMART rav1_2 92 156 IPR001471 GO:0003700|GO:0006355
Gabi528g00003 234 CDD AP2 92 150 IPR001471 GO:0003700|GO:0006355
Gabi528g00003 234 MobiDBLite consensus disorder prediction 49 83 - -
Gabi528g00003 234 MobiDBLite consensus disorder prediction 178 206 - -
Gabi528g00003 234 ProSiteProfiles AP2/ERF domain profile. 92 150 IPR001471 GO:0003700|GO:0006355
Gabi528g00003 234 SUPERFAMILY DNA-binding domain 92 152 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi528g00003 Gabi-Chr528 83828 84532 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi528g00003 86 230 AP2-EREBP Transcription Factor Family AT3G23240 62.759 5.84e-57 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gabi528g00003 AP2 1.6e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi528g00003 K14516 - gmx:100779524 248.44