Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi527g00009 ATGGGTTCTAAGGATTATTACGAGATACTTAAGGTGAACTTTGATGCCACGGATGAAGAGTTGAAAAAGGCTTATAAAAGTTTGGTCATTAAATGGCATCCGGATAAGAACCCTCAACACCCAATTAGGAAAGAAGAGTTTGAGACCAAGTTCAAGCAGATTAAAGAGGCCTATGAAGTGCTTAGTGATCCCAAGAAGCGAAAGGTCTATGATTTCTACCGTCACTATCGCCTTAACTCTCATAGCTCCATCAAAGAAAATGGTGATGGGGATGCTGGGAATCTGAAGGAAGATGAAGCAGGGGTGGTTGAGAGCAGATTGCAGTGTACCCTTGAGGACCTTTACAAAGGTTGTAGAGTGAAGCTTAAAATCTTAAGAATGGTTCCTGATGTATTTGGAAGGTTAAAATCCGTAGAAGAAATCTTGCTGATTAATATTGAACCTGGTTGGAGGAATGGCACAGAAATCATTTTTTCTGGGAGAGGCAACCAAAAACCAGGAGCTGCTCCAGGTGATCTAATTTTTGTGTTGGAGGAGAAACCACATGCTTTTTTCAAGAGGGAAGGGAATGACTTGGTAGTGATCCACAAGATATCACTTCTAGATGCTCTCATAGGAAAGACTCTCCACATACCAACGTTGGATGGAAGAGATCTCACAATCCAAGTGACTGATATTGTGAAACCAGGTTATCAGCTGGTGATCCCAAATGAAGGTATGCCAATTCCAAAGGAACCTAGCAGGAAAGGAAACCTCAGAATCAAGTTTGATGTTATATTTCCAACAAGGCTGACTACGCAACAGAAGTATGATCTAAGAAGTATTCTGAGTGATGCTGATAACTAA 846 0.4102 MGSKDYYEILKVNFDATDEELKKAYKSLVIKWHPDKNPQHPIRKEEFETKFKQIKEAYEVLSDPKKRKVYDFYRHYRLNSHSSIKENGDGDAGNLKEDEAGVVESRLQCTLEDLYKGCRVKLKILRMVPDVFGRLKSVEEILLINIEPGWRNGTEIIFSGRGNQKPGAAPGDLIFVLEEKPHAFFKREGNDLVVIHKISLLDALIGKTLHIPTLDGRDLTIQVTDIVKPGYQLVIPNEGMPIPKEPSRKGNLRIKFDVIFPTRLTTQQKYDLRSILSDADN 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi527g00009 281 CDD DnaJ_C 103 264 - -
Gabi527g00009 281 SUPERFAMILY Chaperone J-domain 1 80 IPR036869 -
Gabi527g00009 281 FunFam DNAJ heat shock family protein 181 276 - -
Gabi527g00009 281 Gene3D DnaJ domain 1 92 IPR036869 -
Gabi527g00009 281 PRINTS DnaJ domain signature 46 66 IPR001623 -
Gabi527g00009 281 PRINTS DnaJ domain signature 25 40 IPR001623 -
Gabi527g00009 281 PRINTS DnaJ domain signature 7 25 IPR001623 -
Gabi527g00009 281 PRINTS DnaJ domain signature 66 85 IPR001623 -
Gabi527g00009 281 CDD DnaJ 5 63 IPR001623 -
Gabi527g00009 281 ProSiteProfiles dnaJ domain profile. 5 74 IPR001623 -
Gabi527g00009 281 ProSitePatterns Nt-dnaJ domain signature. 51 70 IPR018253 -
Gabi527g00009 281 SUPERFAMILY HSP40/DnaJ peptide-binding domain 104 192 IPR008971 GO:0006457|GO:0051082
Gabi527g00009 281 Gene3D - 101 180 - -
Gabi527g00009 281 SMART dnaj_3 4 66 IPR001623 -
Gabi527g00009 281 FunFam Dnaj homolog subfamily b member 99 180 - -
Gabi527g00009 281 Gene3D - 182 262 - -
Gabi527g00009 281 SUPERFAMILY HSP40/DnaJ peptide-binding domain 184 269 IPR008971 GO:0006457|GO:0051082
Gabi527g00009 281 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 1 276 - -
Gabi527g00009 281 Pfam DnaJ C terminal domain 103 261 IPR002939 -
Gabi527g00009 281 Pfam DnaJ domain 5 71 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi527g00009 Gabi-Chr527 79239 80575 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi527g00009 6 74 C2H2 Transcription Factor Family AT1G74250 35.714 2.29e-08 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi527g00009 K09510 - gmx:100778440 406.371