Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi523g00010 ATGAGTGATTCGGCAGATTTGGATTCTTCTATATCCACTCATGCGATATTATCATCTACATCCAGAAAGCCGTATGCTTTGGAAGAAGCTTGTACAGTTTGGGGAGGGGTTTTGATTGATCAAAAAGAAGAATCTACTTCAACCGATATGCCCTTAGGCACGGTCATACATAACATAGAAATTACATTCGGAAAGGGTGGACAATTAGCTAGAGCAGCGGGCGCTGTAGCGAAACTGATTGCAAAAGAGGGAAAATCGGCCACGTTAAAATTACCTTCTGGGGAGGTCCGTTTGATATCCAAAAACTGCTCAGCAACAGTCGGACAAGTGGGGAATGTTGGGGTAAACCAGAAAAGTTTGGGTAGAGCCGGATCTAAATGTTGGCTAGGTAAGCGTCCTGTAGTAAGAGGAGTAGTTATGAACCCTGTAGACCATCCCCACGGGGGTGGTGAAGGGAGGGCCCCAATTGGTAGAAAAAAACCCGCAACTCCTTGGGGTTATCCTGCACTTGGAAAAAGAAGTAGAAAAAGGAATAAATATAGTGATAATTTGATTCTTCGTCGCCGTAGTAAATAG 576 0.441 MSDSADLDSSISTHAILSSTSRKPYALEEACTVWGGVLIDQKEESTSTDMPLGTVIHNIEITFGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPALGKRSRKRNKYSDNLILRRRSK 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi523g00010 191 Gene3D Ribosomal protein L2, domain 3 112 190 IPR014726 -
Gabi523g00010 191 MobiDBLite consensus disorder prediction 141 191 - -
Gabi523g00010 191 PANTHER RIBOSOMAL PROTEIN L2 48 190 IPR002171 GO:0003735|GO:0005840|GO:0006412
Gabi523g00010 191 Pfam Ribosomal Proteins L2, C-terminal domain 49 166 IPR022669 GO:0003735|GO:0005840|GO:0006412
Gabi523g00010 191 Gene3D - 10 111 IPR014722 -
Gabi523g00010 191 FunFam 50S ribosomal protein L2 111 191 - -
Gabi523g00010 191 NCBIfam 50S ribosomal protein L2 48 190 IPR005880 GO:0003723|GO:0003735|GO:0006412|GO:0015934|GO:0016740
Gabi523g00010 191 ProSitePatterns Ribosomal protein L2 signature. 133 144 IPR022671 GO:0003735|GO:0005840|GO:0006412
Gabi523g00010 191 SUPERFAMILY Translation proteins SH3-like domain 49 188 IPR008991 -
Gabi523g00010 191 MobiDBLite consensus disorder prediction 175 191 - -
Gabi523g00010 191 FunFam 50S ribosomal protein L2, chloroplastic 36 111 - -
Gabi523g00010 191 SMART Ribosomal_L2_C_2 49 168 IPR022669 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi523g00010 Gabi-Chr523 76442 77135 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi523g00010 50 150 Cytoplasmic Ribosomal Protein Gene Family AT3G51190 45.536 5.20e-21 85.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi523g00010 K02886 - csin:114298497 332.413