Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi523g00003 ATGGCTCCTCCTTCAGATATCAATCATCTTTCTCACCCTTGTTTATATGGGGATTTTGTTTCTTCATACTCAGAGAGAAAGTCTGGTTTTATGAAATGGTTTGGCAAGGTTTTCAAAATTGGGTCCAATAGAGGAAAGTGTGGTGATCGTAATCTACAGGAGCCTGTGGAGGAAAACATGGTTTGGCGAGTTCCAACTAGATCGTTGGATGAACGTGCTAGATCCCGGAAGGAGGAAGAGGATCTGAATCGTGCAATTTCACTCTCTTTAAGTGAAGATTTAAAGATTCCAACTGGATATAGATGGCGGACAGGAATTGATGAAGATTTGGCAAAGGCACTACAGGATCGCATGCACTCATCTGCACATCCTCCTTATGCCCCTCTACCTTTTCATCCCCGGTCACTTAGTATTCCGTCGCATATCAAAATATGTGGAGGGTGCAACCGGGAGATACTATACGGAAATTGTTTGGGATTTGAGAATAGTTATTTTCATCCAGACTGCTTTAGGTGCCACTCTTGTCATCACCCCATTACTGAGCATCAGTTTTCTTTGTCAGGGAAGCATCCATATCACCAATCCTGTTTTAAAGAATTGACCCACCCTAAATGTGAAGTTTGCCATCAACATATTCCAATAAATGCCGCTGGTTTGATTGAGTATAGGTGCCACCCCTATTGGAACCAAAAGTATTGTCCATCCCATGAAAAAGATAACACAGCTCGCTGCTGTAGTTGTGAAAGATTAGAGTGTCGGAATGAAAGATACTATAGATTGGAAGATGGACGTACATTGTGCTTTGAGTGCATGGAATCTGCTATAACGGATACTGGTGAATGTCAGCCTCTTTATCATGCTATCAGAGACTATTATGAAGGAATGAACATGAGGATAGATCAACAAGTTCCAATGCTTCTCGTTGGGAGAGAAGCACTTAATGAAGCTATTTTTGGGGAGAAGAATGGTTTCCATCACTTGCCAGAAACAAGAGGTTTATGCCTATCAGAAGAGCAGACTGTCACCAGTGTACATAGATGGCCAACACTATTTGGAGGCCATAGATTTATAGGGATGAGAACTCAACCTCAAAGGCTGACTAGAAAATGTGAAGTTACAGCTATTCTTGTTCTATATGGTCTTCCAAGGTTACTCACTGGTGCTATCCTTGCCCATGAGTTGATGCATGCTTGGTTACGGCTTAAAGGTTACCGCAACCTTAATCCTGAAGTAGAGGAAGGTATATGTCAGGTTCTTTCTTACATGTGGCTTGATTCAGAAGTGATGCCTGGTTCAAGAACCATGCCATCAACATCAGCAGCAGGTTCTTCTTCTTCCTCGTACTCCTCATCATCAACATCATCATCAAAGAAAGGTGCAAAATCTCAAGTTGAAAATAAATTGGGTGCATTTTTCATGAACCAAATTGCCAATGATTCTTCCCCATCTTATGGTGGTGGCTTTAGAGCTGCAAATGAAGCTGTTAATAAATATGGTTTACGTTGTACTCTGGAGCATATTCGTTTTACTGGTCAGTTCCCACTGTAA 1548 0.416 MAPPSDINHLSHPCLYGDFVSSYSERKSGFMKWFGKVFKIGSNRGKCGDRNLQEPVEENMVWRVPTRSLDERARSRKEEEDLNRAISLSLSEDLKIPTGYRWRTGIDEDLAKALQDRMHSSAHPPYAPLPFHPRSLSIPSHIKICGGCNREILYGNCLGFENSYFHPDCFRCHSCHHPITEHQFSLSGKHPYHQSCFKELTHPKCEVCHQHIPINAAGLIEYRCHPYWNQKYCPSHEKDNTARCCSCERLECRNERYYRLEDGRTLCFECMESAITDTGECQPLYHAIRDYYEGMNMRIDQQVPMLLVGREALNEAIFGEKNGFHHLPETRGLCLSEEQTVTSVHRWPTLFGGHRFIGMRTQPQRLTRKCEVTAILVLYGLPRLLTGAILAHELMHAWLRLKGYRNLNPEVEEGICQVLSYMWLDSEVMPGSRTMPSTSAAGSSSSSYSSSSTSSSKKGAKSQVENKLGAFFMNQIANDSSPSYGGGFRAANEAVNKYGLRCTLEHIRFTGQFPL 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi523g00003 515 ProSiteProfiles LIM domain profile. 143 203 IPR001781 -
Gabi523g00003 515 Gene3D Cysteine Rich Protein 140 202 - -
Gabi523g00003 515 Pfam Protein DA1 294 509 IPR022087 -
Gabi523g00003 515 PANTHER PROTEIN DA1-RELATED 2 33 514 IPR045218 -
Gabi523g00003 515 Pfam LIM domain 145 198 IPR001781 -
Gabi523g00003 515 CDD LIM_DA1 145 197 - -
Gabi523g00003 515 SMART lim_4 144 196 IPR001781 -
Gabi523g00003 515 ProSitePatterns LIM zinc-binding domain signature. 145 179 IPR001781 -
Gabi523g00003 515 MobiDBLite consensus disorder prediction 434 460 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi523g00003 Gabi-Chr523 42140 46549 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Gabi523g00003 DA1-like 7.3e-98 CL0126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi523g00003 - - gmx:100798829 902.123