Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi522g00001 ATGGCTTCTTTTACTCAGCTTCTTTTTCTTCCTCTTCTTCTCCCTTTTCTGGCAACTTCATTTGTTAGAGTTTTTTCCTTTAAAGTTTCAGTTAAAACAACTAATTTGGCTCCTTTAAATTGCTCTGCAAAGATCAGAACATGTAATGCCTTACTCTACCACATAAACCAAAATAATCTCAATATTGAAGAAATAGCCTCTTATTATTCTGTTATTTCTTCTCATATCAAACCTATAATGTATGGTACCAAACAAGATTACCTTATAACAACAGTACCTTGTTCTTGCAAAAACACCAATGACCTTAGTGGATATTTTTATGATACAACCTATAAAGTGAGACCAAATGACACTTTTTTTAACATTTCAAACCTGATTTACAGTGGACAAGCCTGGCCAGTTAATAGTGTATTGTTTCCAAATGACAATTTAACTATACATATTCCATGTGGGTGTTCAGAAAGTGGTTCTCAAATAGTTGTCACTTATACAGTTCAGCAGAATGATACACCAACATCTATTGCTAATTTGCTAAATGCTACACTGGATGGCATCCTGAGCTTGAACAAAGTTCTAATTAAGAACGCTGCATACATAGATGTCGGTTGGGTGTTATTTGTTCCCATGGAATTGAAAGGGCTTGCACCTTCCAACAAAGAAGAAAAGAAACATAAATGGACGACAACAATCATTGCCATCTTAGCGGGCGTGATATTACTCTCAATTATATTTATTACAGTGATCGTTCTCAATCTCAGGAGAAATAAAGCCTATCAATTCAGCAAAGAAGATCCACTTGTTGTCTCTAGAAGATCTATTGCCAGTAAACTTATTTCCTCAAAGAACCTTAACCTTCATAAGGAATATATGTTAGATCATTGCTTATTCATGGTAAATATTTGTGCAGATGTTATGCCACTAGAATCAGAAGGACCTGTAATATATAACCTTGAGGAGATCGAAGAGGCTACAAATTACTTTGACGAAACTCAAAGAATTGGAAGTGGTGGATTTGGGAGTGTGTATTTTGGAATGTTAGGGAAGAAGGAGGTTGCTGTGAAGAAGATGAGATCTAATAAATCTAAAGAGTTCTATGCAGAACTCAAGGTCTTGTGTAAGATCCATCATGTCAACATTGTGGAGCTGTTGGGATATGCCAGCGGAGAAGATCACCTCTATTTGGTGTATGAGTATGTTCCAAATGGATCTCTCACTGATCATCTTCATAATCCATTACTGAAAGGCCACCAGCCTCTTTCTTGGAGTACTAGGGTTCAGATTGCACTGGATGCTGCAAAAGGTCTTGAATATATACATGATTATACAAAAGCACAATATGTGCACCGTGATATAAAGACTAGCAATATTCTTCTTGATGAGAAGCTCAGAGCAAAGGTGGGAGATTTTGGACTTGCAAAGCTGGTAGACCGAACCAATGATGAAAATTCTATAGCAACAAGGCTTGTTGGAACTCCAGGCTACCTTCCACCAGAATCTGTGAAAGAGCTTCAGGTTACCCCAAAAACCGATGTTTTTGCATTTGGAGTGGTTCTGTCAGAGCTATTAACAGGGAAACGTGCACTATTTCGGGACAGCAAAGAAGCCACCAAAATGAAATCACTTATTACTGTCGTTAATAAAATATTCCAAAATGATGACCCGGAGACAGCTTTAGAAGATGCCATAGATAAGAATCTTGAAGCGAGCTATCCCATGGAAGATGTCTACAAGATGGCAGAAATAGCTGAGTGGTGCATGCAAGAAGATCCAACGGAAAGGCCTGAAATGAGGGATATTGTTAGGGAATTGTCACATATTGTTAGGTCCTCAGTAGAGTGGGAAGCATCACTAGGTGGAAACAGCCAGGTTTTTATTGGGTTGTATAATGGAAGATGA 1896 0.3782 MASFTQLLFLPLLLPFLATSFVRVFSFKVSVKTTNLAPLNCSAKIRTCNALLYHINQNNLNIEEIASYYSVISSHIKPIMYGTKQDYLITTVPCSCKNTNDLSGYFYDTTYKVRPNDTFFNISNLIYSGQAWPVNSVLFPNDNLTIHIPCGCSESGSQIVVTYTVQQNDTPTSIANLLNATLDGILSLNKVLIKNAAYIDVGWVLFVPMELKGLAPSNKEEKKHKWTTTIIAILAGVILLSIIFITVIVLNLRRNKAYQFSKEDPLVVSRRSIASKLISSKNLNLHKEYMLDHCLFMVNICADVMPLESEGPVIYNLEEIEEATNYFDETQRIGSGGFGSVYFGMLGKKEVAVKKMRSNKSKEFYAELKVLCKIHHVNIVELLGYASGEDHLYLVYEYVPNGSLTDHLHNPLLKGHQPLSWSTRVQIALDAAKGLEYIHDYTKAQYVHRDIKTSNILLDEKLRAKVGDFGLAKLVDRTNDENSIATRLVGTPGYLPPESVKELQVTPKTDVFAFGVVLSELLTGKRALFRDSKEATKMKSLITVVNKIFQNDDPETALEDAIDKNLEASYPMEDVYKMAEIAEWCMQEDPTERPEMRDIVRELSHIVRSSVEWEASLGGNSQVFIGLYNGR 631
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi522g00001 631 CDD LysM 161 207 IPR018392 -
Gabi522g00001 631 Pfam Protein kinase domain 328 601 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi522g00001 631 Gene3D Phosphorylase Kinase; domain 1 307 398 - -
Gabi522g00001 631 ProSiteProfiles LysM domain profile. 161 207 IPR018392 -
Gabi522g00001 631 FunFam PTI1-like tyrosine-protein kinase 3 399 617 - -
Gabi522g00001 631 SMART serkin_6 327 607 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi522g00001 631 SMART LysM_2 162 208 IPR018392 -
Gabi522g00001 631 ProSitePatterns Serine/Threonine protein kinases active-site signature. 446 458 IPR008271 GO:0004672|GO:0006468
Gabi522g00001 631 ProSiteProfiles Protein kinase domain profile. 327 608 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi522g00001 631 SUPERFAMILY LysM domain 161 208 IPR036779 -
Gabi522g00001 631 Pfam LysM domain 163 208 IPR018392 -
Gabi522g00001 631 SUPERFAMILY Protein kinase-like (PK-like) 309 603 IPR011009 -
Gabi522g00001 631 ProSitePatterns Protein kinases ATP-binding region signature. 333 355 IPR017441 GO:0005524
Gabi522g00001 631 Gene3D Transferase(Phosphotransferase) domain 1 399 618 - -
Gabi522g00001 631 Gene3D LysM domain 152 225 IPR036779 -
Gabi522g00001 631 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 37 624 IPR044812 GO:0019199|GO:0045087
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi522g00001 Gabi-Chr522 4555 15123 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi522g00001 307 631 Receptor kinase-like Gene Family AT1G51940 50.602 4.80e-111 346
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Gabi522g00001 Pkinase 3.4e-53 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi522g00001 - - gmx:100791718 922.154