Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi517g00008 ATGATGGTGATGATGAAACTTGGAAAGTGGGTTTCCTTTGTTTTTGTTGCTTTTATGTTTTTGGTGAATGGGTCGTTTGCCGCATATACTCCTTCTGATAATTATCTAATAGCTTGTGGTTCCTCCCAAAACATCACCTTCCAAGATCGAACTTTTGTTCCTGATTCACAGCATTCTTCACTTGTGTTGAAAACCGGGAATTCTATTGTTGCTAGTTCCAATTCTAGTGTCCCATTCCCAATCTACCAATCAGCTAGGATTTTCACTGAGAAAGCTTCTTATAGATTTGAAATTGAGCAAGGTCGGCACTGGGTTAGGCTATATTTTTCTCCTCTTTCCAACTCTGGCCATAATTTGAGTTCTGCTGTTTTAACAGTGGTTACTGATGATTTTGTTCTCTTGAGAAACTTCACATTTAAGAACTACAATGGTTCTTATATGTTCCGGGAGTATGCCATCAATGTTACCTCTGAAACCTTGACTGTTACCTTCATTCCTTCAAATGGTTCAGTTGCCTTTGTTAATGCAATTGAAGTTGTGTCAATGCCAGATGACTTGTTTGTTGATCAGGCATATGCTCTTAACCCATCAGCCCCATTCAGTGGCCTTTCTGAACTTGCTTTTGAAACTGTTTACCGTTTAAACATAGGAGGTCCCTTGCTCACTGCCCAAAATGATACCCTTGGAAGGAATTGGGAGAATGATCTGAAATACCTCCATGTGAACAGCTCAGTTATTGATGTGTCAGTCAACCCTTCCAGCATTAAGTATCGGGCAGGTGTTACGCCGCAGACTGCCCCGAATTGGGTCTATTCCACGGCTGAAGCAATGGGGGATGCAAATGTTGCCAATTCAAATTTCAACATTACTTGGGTCTTTACTGTGGATCCAAACTTCTCCTATTTTATTCGGGTGCACTTTTGTGATATTATTAGCATGTCACTCAACACTTTAGTGTTCAATTTATTCATAAATTCTGACATTGCTCTTGGAAGCCTTGACCTCTCATCCATAACTGGGGATTTGGCTGTGCCTTACTATAAGGACTTTGTTTCCAATGCTTCAGCAGACACTTTGACAATAAGTGTTGGTCCTGATACAATGGCAGACATCACAAATGCCTCCATGAATGGACTGGAGATAATGAAAATCAGCAATGCATTGAAGAGCTTGGATGGACTTTCTTCAGTTGAGACTCTCCTTCCTAGTTCTTCATCAAACAAGAACATGGTAGGAATAATAGTTGGTTCTGTTGTTGGGGCTGTGGTTGCCATAGCTTTGGTTGGTTTGTGTTATTGCTGCTTGTTGAGATGCAAGTCAAAGTCTACTCAACAAGGCCATACATGGCTTCCTTTACCTTTATACGGAAACTCCCAGACCATGACAAAAATGTCAACAACTTCGCAGAAGAGTGGAACTGCAAGCTGCATTTCTTTAGCTTCATCAAACCATGGACGGTTCTTAACTTTCCAAGAAATCCTAGATGCAACCAACAAATTTGATGAGAAGCTGCTTCTTGGCGTTGGTGGTTTTGGCAGGGTTTATAAAGGAACACTTGAAGATGGAACCAATGTAGCTGTTAAAAGGGGGAACCCTAGATCTGAACAAGGTCTTGCTGAATTCCGAACAGAAATTGAAATGTTATCCAAGCTTCGCCATCGTCATCTTGTGTCTCTCATTGGTTATTGTGATGAGAGGTCGGAAATGATTCTTGTGTATGAATACATGGCTAATGGACCCCTCAGGAGTCATTTGTATGGAACAGACCTACCACCTCTATCGTGGAAGCAGAGGCTTGAAATTTGCATTGGAGCAGCAAGAGGTCTTCATTATCTCCACACTGGTGCATCTCAAAGCATAATTCACCGAGATGTAAAGACAACAAACATCCTCTTAGATGATAACTTTGTTGCTAAAGTTGCTGACTTTGGCCTTTCCAAAACTGGTCCTGCTCTTGATCAGACACATGTGAGCACTGCTGTTAAAGGTAGTTTTGGTTATCTTGATCCTGAATACTTCAGAAGGCAACAACTTACGGAGAAATCGGATGTTTATTCATTTGGAGTAGTTTTAATGGAAGTGTTGTGCACAAGACCAGCCTTGAACCCTGTCCTTCCTAGGGAGCAGGTTAATATAGCTGAGTGGGCAATGAGCTGGCAGAAAAAAGGGATGCTTGATCAAATCATGGATCAAAATCTGGTAGGGATTGTCAATCCTGCTTCTCTTAAGAAGTTTGGAGAGACAGCTGAGAAATGCTTGGCTGAGTATGGAGTGGATAGGCCATCTATGGGAGATGTTTTGTGGAATCTTGAATATGCTTTGCAGCTCCAAGAGACCTCATCAGCACTTATGGAACCTGAAGATAACAGCACAAACCACATTACTGGGATTCAGTTAACTCGTCTCGAGCCGTTTGATAACAGTGTGAGTATGATTGATGGGGTAAACTCTGCCACGGATGATGATGCAGAAGATGCTGCTACAAGTGCAGTGTTCTCCCAATTGGTAAATCCTCGTGGAAGATGA 2526 0.4177 MMVMMKLGKWVSFVFVAFMFLVNGSFAAYTPSDNYLIACGSSQNITFQDRTFVPDSQHSSLVLKTGNSIVASSNSSVPFPIYQSARIFTEKASYRFEIEQGRHWVRLYFSPLSNSGHNLSSAVLTVVTDDFVLLRNFTFKNYNGSYMFREYAINVTSETLTVTFIPSNGSVAFVNAIEVVSMPDDLFVDQAYALNPSAPFSGLSELAFETVYRLNIGGPLLTAQNDTLGRNWENDLKYLHVNSSVIDVSVNPSSIKYRAGVTPQTAPNWVYSTAEAMGDANVANSNFNITWVFTVDPNFSYFIRVHFCDIISMSLNTLVFNLFINSDIALGSLDLSSITGDLAVPYYKDFVSNASADTLTISVGPDTMADITNASMNGLEIMKISNALKSLDGLSSVETLLPSSSSNKNMVGIIVGSVVGAVVAIALVGLCYCCLLRCKSKSTQQGHTWLPLPLYGNSQTMTKMSTTSQKSGTASCISLASSNHGRFLTFQEILDATNKFDEKLLLGVGGFGRVYKGTLEDGTNVAVKRGNPRSEQGLAEFRTEIEMLSKLRHRHLVSLIGYCDERSEMILVYEYMANGPLRSHLYGTDLPPLSWKQRLEICIGAARGLHYLHTGASQSIIHRDVKTTNILLDDNFVAKVADFGLSKTGPALDQTHVSTAVKGSFGYLDPEYFRRQQLTEKSDVYSFGVVLMEVLCTRPALNPVLPREQVNIAEWAMSWQKKGMLDQIMDQNLVGIVNPASLKKFGETAEKCLAEYGVDRPSMGDVLWNLEYALQLQETSSALMEPEDNSTNHITGIQLTRLEPFDNSVSMIDGVNSATDDDAEDAATSAVFSQLVNPRGR 841
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi517g00008 841 CDD STKc_IRAK 506 771 - -
Gabi517g00008 841 Gene3D Phosphorylase Kinase; domain 1 458 575 - -
Gabi517g00008 841 SMART serkin_6 500 773 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi517g00008 841 FunFam receptor-like protein kinase FERONIA 461 575 - -
Gabi517g00008 841 Gene3D Transferase(Phosphotransferase) domain 1 576 795 - -
Gabi517g00008 841 Gene3D - 206 386 - -
Gabi517g00008 841 Gene3D - 34 183 - -
Gabi517g00008 841 Pfam Protein tyrosine and serine/threonine kinase 505 763 IPR001245 GO:0004672|GO:0006468
Gabi517g00008 841 FunFam Receptor-like protein kinase FERONIA 207 386 - -
Gabi517g00008 841 PANTHER OS07G0166700 PROTEIN 486 777 IPR045272 GO:0004714|GO:0006468
Gabi517g00008 841 FunFam Putative receptor-like protein kinase 34 183 - -
Gabi517g00008 841 ProSitePatterns Serine/Threonine protein kinases active-site signature. 620 632 IPR008271 GO:0004672|GO:0006468
Gabi517g00008 841 ProSitePatterns Protein kinases ATP-binding region signature. 506 528 IPR017441 GO:0005524
Gabi517g00008 841 SUPERFAMILY Protein kinase-like (PK-like) 479 771 IPR011009 -
Gabi517g00008 841 Pfam Malectin-like domain 37 384 IPR024788 -
Gabi517g00008 841 ProSiteProfiles Protein kinase domain profile. 500 773 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi517g00008 841 FunFam Receptor-like protein kinase FERONIA 576 792 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi517g00008 Gabi-Chr517 92635 95552 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi517g00008 5 841 Receptor kinase-like Gene Family AT3G46290 51.761 0.0 837
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Gabi517g00008 Malectin_like 4.2e-37 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi517g00008 - - gmx:100809700 1412.13