Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi517g00006 ATGGGAAAATTTGCAGCAAAGATTAGAGATACAACGAGGAATGGCACAAGGGTTTGGCTTGGAACCTTTGATAGTGCAGAGTCTGCTGCTTTAGCTTATGACCAAACTGCATTTTCCATGAGAGGCCATAAAGCTGCACTCAATTTTCCAGTCAAAAGGGTAAAAGAATCTTTGCAAGAAATCAAATATGGTTGCTTGCAAGGTTTTTCACCGGCACTTGCACTCAAGGAGTGGAACTGCATCCAAAGAAATTTGTCAACACAACCGGGGTATACAACAAGCCACCTGATCTGGAAGATGTTCAAGCTTGAAAATATCTTTGATTGA 327 0.4128 MGKFAAKIRDTTRNGTRVWLGTFDSAESAALAYDQTAFSMRGHKAALNFPVKRVKESLQEIKYGCLQGFSPALALKEWNCIQRNLSTQPGYTTSHLIWKMFKLENIFD 108
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi517g00006 108 PANTHER DNA-BINDING DOMAIN 2 59 IPR044808 GO:0003700|GO:0009873
Gabi517g00006 108 Pfam AP2 domain 2 43 IPR001471 GO:0003700|GO:0006355
Gabi517g00006 108 CDD AP2 2 51 IPR001471 GO:0003700|GO:0006355
Gabi517g00006 108 SUPERFAMILY DNA-binding domain 2 51 IPR016177 GO:0003677
Gabi517g00006 108 SMART rav1_2 2 56 IPR001471 GO:0003700|GO:0006355
Gabi517g00006 108 Gene3D AP2/ERF domain 1 52 IPR036955 GO:0003700|GO:0006355
Gabi517g00006 108 ProSiteProfiles AP2/ERF domain profile. 1 50 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi517g00006 Gabi-Chr517 78657 78983 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi517g00006 2 106 AP2-EREBP Transcription Factor Family AT3G23240 57.143 1.54e-34 116
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Gabi517g00006 AP2 8.7e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi517g00006 K14516 - gmx:100812017 142.124