Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi517g00002 ATGAATGGACTGAAGATTATGAGCTGGGATGTGCTTTCTTCTGTTGAGGATATCCTTCCCAAAGTTACTTCTGTAATTAGGAACAATGCGCTGGCTATGGTCTCTATTCTTGGCGCCTCTGTCTTGTTATTGTTATTTGGTTCACTTTGCTATTACTTCGTAGCTCGCATGTCCAAGGGAACTTCTCAAAACAATGGCTCTGCGTGTAAATTGTCATCGGATAGTTCTAGTACTTGTAGAATCTTTACATTCCAAGAGGTTCAAGAGGCAACCAACAATTTTCAAGAGGATTTGCTTATTGGGACTGGTGGGTTTGGGAAGGTCTACAAGGGAAAACTTGAAAATGGGACAAGAGTAGCCGTTAAGAGAGCTAGCCCTGAGTCAAGACAAGGTGTGGATGAGTTCCAAAATGAGATTGATTTGTTATCTAAACTTCACCACCGCCATATTGTGTCTCTACTTGGCTACTGCCATGAAGGGATGGAAATGATTCTTGTATATGAGTACATCATGGCCAATGGAACTTTGAGCAAATGTCTTTATGTACCAAATGTGGCCCCACTCTCTTGGAAGCAGCGACTTGAAATTTGCATTGGAGCTGCAAGAGGGCTTCATCATCTTCACACTAGTACTGATCAAGGCATAATCCATAGAGATGTGAAAACTGACAACATTCTCTTGGATGATAACTTTGTTGCCAAAGTTACCGACCTTGGCATCTCAAAGAAAGGGTCTTCTCTTTATAAGAGCCATGTGACCACTTTTGTGAAGGGCACTTATGGTTACATAGATCCTGAGTATTTCAGAAATGGTCACCTAACTGAAAAATCAGATGTGTATTCTTTTGGAGTGGTTCTGATAGAAGCCATCTGTGGTAGGCCTGCTTTAGATCATGGTCTTACATCAGATAGAATTAATGTAGCAGTTTGGGCATTAAATTCTGAAGCAAATGGTCAGTTAAATCAGATAATAGACCCAAATCTAATTGGAAATTTTAGACTTTCTTCTCTTAAAAAGGTCTGGGAGGTGGCTAAAAGGTGCCTGGCAGAACATGCGACCAATAGACCACCAATGAGTTATGTCCTGTATAGTTTAGAAGATGCTCTCCACTTGGAACTCAGAAATATAGATGATGAGGAAAATTCATTCTCAAATTGCACTATGCAAGGTAGTGCCAGAAGTGAAACTGAAGTAGATGCCATCTCACCATTAACTATCTTTGAATCACTATAA 1233 0.4031 MNGLKIMSWDVLSSVEDILPKVTSVIRNNALAMVSILGASVLLLLFGSLCYYFVARMSKGTSQNNGSACKLSSDSSSTCRIFTFQEVQEATNNFQEDLLIGTGGFGKVYKGKLENGTRVAVKRASPESRQGVDEFQNEIDLLSKLHHRHIVSLLGYCHEGMEMILVYEYIMANGTLSKCLYVPNVAPLSWKQRLEICIGAARGLHHLHTSTDQGIIHRDVKTDNILLDDNFVAKVTDLGISKKGSSLYKSHVTTFVKGTYGYIDPEYFRNGHLTEKSDVYSFGVVLIEAICGRPALDHGLTSDRINVAVWALNSEANGQLNQIIDPNLIGNFRLSSLKKVWEVAKRCLAEHATNRPPMSYVLYSLEDALHLELRNIDDEENSFSNCTMQGSARSETEVDAISPLTIFESL 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi517g00002 410 ProSiteProfiles Protein kinase domain profile. 94 373 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi517g00002 410 Gene3D Phosphorylase Kinase; domain 1 66 169 - -
Gabi517g00002 410 SMART serkin_6 94 369 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi517g00002 410 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 27 379 - -
Gabi517g00002 410 FunFam Receptor-like protein kinase FERONIA 171 387 - -
Gabi517g00002 410 Pfam Protein tyrosine and serine/threonine kinase 99 362 IPR001245 GO:0004672|GO:0006468
Gabi517g00002 410 ProSitePatterns Protein kinases ATP-binding region signature. 100 122 IPR017441 GO:0005524
Gabi517g00002 410 ProSitePatterns Serine/Threonine protein kinases active-site signature. 215 227 IPR008271 GO:0004672|GO:0006468
Gabi517g00002 410 SUPERFAMILY Protein kinase-like (PK-like) 72 365 IPR011009 -
Gabi517g00002 410 FunFam receptor-like protein kinase FERONIA 56 169 - -
Gabi517g00002 410 CDD STKc_IRAK 100 366 - -
Gabi517g00002 410 Gene3D Transferase(Phosphotransferase) domain 1 171 391 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi517g00002 Gabi-Chr517 3436 4668 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi517g00002 58 385 Receptor kinase-like Gene Family AT1G30570 56.024 4.38e-123 375
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Gabi517g00002 PK_Tyr_Ser-Thr 4.6e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi517g00002 - - gmx:102659547 531.176