Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi516g00002 ATGGCTTTCATGGTTGCGTTATTGAATTTAATGCTCATGTTTTCTGTAGTTTCAAAAGGGAATTCACTTAGCTTAAACTACTATGAAAAAACATGCCCTGATGTAGAGTTCATTGTTGCCAAGACGGTGAAGGCTGCCAATGCTGTGGACAAAACTGTTCCTGCAGCACTTCTAAGAATGCACTTCCATGACTGCTTCATTCGGGGATGTGATGCCTCTGTACTGCTAAACTCAAAAGGAAGCAACAAAGCAGAAAAAGATGGACCACCAAATATTTCTTTGCATGCATTCCACGTCATTGATAATGCAAAGAAAGCAGTAGAAGCTGCATGCCCTGGTGTGGTCTCTTGTGCTGATATCCTAGCTCTAGCAGCAAGGGATGCAGTTTTTCTGTCTGGAGGTCCTGTTTGGGATGTTCCTAAAGGAAGAAAAGATGGAAGAAAATCTAAGGCCAGTGAAACCATACAATTACCAGCACCAACCTTCAACATATCACAATTACAGAAGAGCTTCTCTCAAAGAGGTCTTTCAATGGAAGACTTGGTAGCTCTATCAGGAGGACACACTTTAGGTTTCTCTCACTGCTCTTCCTTCCGGAACAGAGTCCATAATTTTGATGCTACACATGACATGGACCCTTCATTAAATCCAACATTTGCAAAAAAACTAAAATCCATTTGTCCACTAAAAAACCAGGAAAAGAATGCAGGCACCACCTTGGACACTTCTTCTACTACTTTTGATAATGCATATTACAAGCTGATCCTCCAAAGGAAGGGCATATTTTCTTCTGATCAAGCTCTTCTTGATACCCCAAAGACCAAGGATCTTGTTTCTGAGTTTGCCACCTCACAAGATGCTTTCTTCAAGGCTTTTGTGACGTCCATGATCAAAATGAGCAGCATTAATGGTGGGCAAGAGGTTAGGAAGGACTGCAGGGTGGTCAATTAG 951 0.4175 MAFMVALLNLMLMFSVVSKGNSLSLNYYEKTCPDVEFIVAKTVKAANAVDKTVPAALLRMHFHDCFIRGCDASVLLNSKGSNKAEKDGPPNISLHAFHVIDNAKKAVEAACPGVVSCADILALAARDAVFLSGGPVWDVPKGRKDGRKSKASETIQLPAPTFNISQLQKSFSQRGLSMEDLVALSGGHTLGFSHCSSFRNRVHNFDATHDMDPSLNPTFAKKLKSICPLKNQEKNAGTTLDTSSTTFDNAYYKLILQRKGIFSSDQALLDTPKTKDLVSEFATSQDAFFKAFVTSMIKMSSINGGQEVRKDCRVVN 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi516g00002 316 FunFam Peroxidase 158 299 - -
Gabi516g00002 316 FunFam Peroxidase 26 169 - -
Gabi516g00002 316 PRINTS Haem peroxidase superfamily signature 54 68 IPR002016 GO:0004601|GO:0006979|GO:0020037
Gabi516g00002 316 PRINTS Haem peroxidase superfamily signature 133 145 IPR002016 GO:0004601|GO:0006979|GO:0020037
Gabi516g00002 316 PRINTS Haem peroxidase superfamily signature 180 195 IPR002016 GO:0004601|GO:0006979|GO:0020037
Gabi516g00002 316 PRINTS Haem peroxidase superfamily signature 115 132 IPR002016 GO:0004601|GO:0006979|GO:0020037
Gabi516g00002 316 PRINTS Haem peroxidase superfamily signature 240 255 IPR002016 GO:0004601|GO:0006979|GO:0020037
Gabi516g00002 316 SUPERFAMILY Heme-dependent peroxidases 23 316 IPR010255 GO:0004601|GO:0006979|GO:0020037
Gabi516g00002 316 Gene3D Peroxidase, domain 2 158 299 - -
Gabi516g00002 316 PRINTS Plant peroxidase signature 133 148 IPR000823 GO:0004601|GO:0006979|GO:0020037
Gabi516g00002 316 PRINTS Plant peroxidase signature 254 271 IPR000823 GO:0004601|GO:0006979|GO:0020037
Gabi516g00002 316 PRINTS Plant peroxidase signature 95 108 IPR000823 GO:0004601|GO:0006979|GO:0020037
Gabi516g00002 316 PRINTS Plant peroxidase signature 32 51 IPR000823 GO:0004601|GO:0006979|GO:0020037
Gabi516g00002 316 PRINTS Plant peroxidase signature 238 253 IPR000823 GO:0004601|GO:0006979|GO:0020037
Gabi516g00002 316 PRINTS Plant peroxidase signature 114 124 IPR000823 GO:0004601|GO:0006979|GO:0020037
Gabi516g00002 316 PRINTS Plant peroxidase signature 56 76 IPR000823 GO:0004601|GO:0006979|GO:0020037
Gabi516g00002 316 PRINTS Plant peroxidase signature 294 307 IPR000823 GO:0004601|GO:0006979|GO:0020037
Gabi516g00002 316 PRINTS Plant peroxidase signature 179 191 IPR000823 GO:0004601|GO:0006979|GO:0020037
Gabi516g00002 316 Gene3D - 26 316 - -
Gabi516g00002 316 ProSitePatterns Peroxidases proximal heme-ligand signature. 180 190 IPR019793 -
Gabi516g00002 316 ProSiteProfiles Plant heme peroxidase family profile. 22 316 IPR002016 GO:0004601|GO:0006979|GO:0020037
Gabi516g00002 316 CDD secretory_peroxidase 23 315 IPR033905 GO:0004601|GO:0042744
Gabi516g00002 316 PANTHER PEROXIDASE 25-RELATED 12 304 IPR000823 GO:0004601|GO:0006979|GO:0020037
Gabi516g00002 316 Pfam Peroxidase 40 284 IPR002016 GO:0004601|GO:0006979|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi516g00002 Gabi-Chr516 45296 46830 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi516g00002 2 315 Peroxidase AT5G42180 65.397 2.15e-154 433
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi516g00002 K00430 - qsa:O6P43_033577 533.487