Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi511g00004 ATGATGCAGCCTGAGATCCAGAAGTCCCAATGGTCATTTCATGAAGTCATGAACTCAACTTTTGATGAACTTGTTGAGCCCTATGACTTCACCATAGATGACTATGTTGGTGAATGTGGGACCTATGGCTTTGCCATGGATGACCATGTTGGTGATTGTGGATTCAATACTCTTTTCAGAACTCCTCAGGATAGTGCTTCTGAAGTTTTCTCTATTCCCTTTCCTAACACCATGTTAACCAATGATCATATCCAATACCCAATTGAGCAAGAAACCCTGCAACTTCCATCACTTATGGAAGATTTCCCCATGGAATTGGATGATTTTGATTCCATTCTGAATGCTCAGGTTGTTGGTATTGATGGCTATGGATGCCAAGAAGAAAGTGAAGGTAGCTTCCCTTCACAGAATTTATCCAGTGAGGTAGAAGATGCATGGAGTCCTACCCCATCAGTGAAGTCACAATTGTCCTCAATTCAACCTTCACCAACCTTGCCACAAGAAGGCATGGAAATTGACAACCAAGTGAGTCTTCCACATCTTATGGAGGCTTGTGGAGAAGCCATGGAGCAAGCACAAAAAGCACTAGCTGAAGTGATCTTGAGATGCATAAGCCAGAAAGTTAGCCCACTTGGTGAATCTCTTGAGCGCCTTGCATTCTATTTGTCTCAAGATATGACAAATCAAGGAGAAAATCTCAAAGGGGAGGCCTTCAAAAACTTTGAGGCTTCTTTGAGGGCATTCTACCAAGGGCTCCCAAATGGAAAAGTTGCTCATTTTGCAGCTGTTTCAGCAGTTCTTGAGGCTATACCAGAAGATTGTGATGTTATACATATAATAGACTTTGATATGGGACAAGGGATTCAATGGCCTCCAATGATTGAGGCCATTGCTTGCTTGCACAAAACATTGAAGTTGACATCTATCAAATGGGGTGATGAAAGCCCTGAATCTTTGTCCACTCCATGGACTTTTGAGGAAATCAGAAGGCAGCTCTATGAGCATGCCAAATCCTGTGGTTTGAAGTTGAAGGTAGAGGAAAAGGGAGTGGAGGAATTGATCACTGAGATGAAGAAAATGAACAAAAGGGGTGGGAAGAGAGAGTTTTTGGCCTTCAATTGCATGGTGGGACTTCCACATATGGGGAGAGTAATGAGCAGAAGACATGTCTTGGAGTTTCTAAGTTTAGCTAAGGATTTGATCAACAACTCTGGCAACAGGGGAATTGTCACTTTTGGGGATGGGGATGCATTTGAGAAAGTGAAAAATAGCTTGAATTTCAGGTCATTCTTTAATGGACATTTGGTGCATTACCAGGCCTTGTTAGAATCAATCGAGTCACATTTCACAACTCATTTGTCAGTAGCAAGAACTGGCATGGAGTGCTTATTTGTGGCACCTCATATCTCTTCTCTTGCTTGGTTACAAACATGGGAGGAGATGAAAAGGGATTGCAATCTTCATGCAGATATAAGCATGGAGGGTTGTAGATTGAGCAAAAAGATTTTAATGGAAGTCACAGAAGTTTTGAGAGGAAGTGAAGGTTCATATCAGGCCAGGATTGAAGGACAAAATGGTAATGAACTTGTTATTGAATGGAAAGGAACCCAACTATTAAGATTTTCGACTTGGAAAATTTAA 1641 0.4156 MMQPEIQKSQWSFHEVMNSTFDELVEPYDFTIDDYVGECGTYGFAMDDHVGDCGFNTLFRTPQDSASEVFSIPFPNTMLTNDHIQYPIEQETLQLPSLMEDFPMELDDFDSILNAQVVGIDGYGCQEESEGSFPSQNLSSEVEDAWSPTPSVKSQLSSIQPSPTLPQEGMEIDNQVSLPHLMEACGEAMEQAQKALAEVILRCISQKVSPLGESLERLAFYLSQDMTNQGENLKGEAFKNFEASLRAFYQGLPNGKVAHFAAVSAVLEAIPEDCDVIHIIDFDMGQGIQWPPMIEAIACLHKTLKLTSIKWGDESPESLSTPWTFEEIRRQLYEHAKSCGLKLKVEEKGVEELITEMKKMNKRGGKREFLAFNCMVGLPHMGRVMSRRHVLEFLSLAKDLINNSGNRGIVTFGDGDAFEKVKNSLNFRSFFNGHLVHYQALLESIESHFTTHLSVARTGMECLFVAPHISSLAWLQTWEEMKRDCNLHADISMEGCRLSKKILMEVTEVLRGSEGSYQARIEGQNGNELVIEWKGTQLLRFSTWKI 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi511g00004 546 Coils Coil 343 363 - -
Gabi511g00004 546 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 153 534 IPR005202 -
Gabi511g00004 546 ProSiteProfiles GRAS family profile. 169 545 IPR005202 -
Gabi511g00004 546 Pfam GRAS domain family 180 545 IPR005202 -
Gabi511g00004 546 MobiDBLite consensus disorder prediction 143 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi511g00004 Gabi-Chr511 69896 71536 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi511g00004 172 546 GRAS Transcription Factor Family AT3G03450 22.785 1.74e-15 77.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Gabi511g00004 GRAS 6.7e-38 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi511g00004 - - gmx:100784347 755.747