Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi509g00008 ATGGCGACGTACTTTCATAGTAATTCAGAAATCCAAGGTGGTGCTGATGGCCTTCAAACTCTTATACTCATGAACCCTGGCTATTTACACTACTCAGACACGCCGCCGCCGCAGCCTCCGCCACCACATGGCGGAAACCTTGTATTCCTCAACTCTGCTGCCACTATGGCCGGAAATAACTCTCTTGCCTCACAAAGTATCTCTCACGCGCCGCCCTCTCACACCCAACAATTTGTCGGCGTGCCACTCTCTTCTGCCTCCGAGGAGCCGTCCATACATGCCCATCACGACGTCTCCGCCTTGCATGGGTTCCTGCCACGCATGCAGTACAATCTATGGAACTCAATAGACCCCAACGCAGCGGCGGCGGCGGCGCGTGAGACATCACGCGCAGCCACTCAGGGACTGTCGCTGAGCCTGCAGGCTCAGCCGCCTGCAGTGTCCTGCGACGAGGTGCGCGTGTCTGGTGGGTCACCATCTTCTGCTTCTGGGGTAACCAATGGTGTTTCGGGTATTCAGAGTGTGCTTATGAGTTCCAAGTATTTGAAGGCAACCCAGGAACTTCTTGACGAGGTTGTGAATGTTAACAATGGCATCAAGGAACCTGCAAAGAAGGGATTTGACAAGATTAAGGTTGTTGGGGAATCATCAACTGGAGCTAGTGGAGACGGTTCAATTGGTGGGGATGGAAGTGGAAAGCTTAGCTCTGAGATATCAACTAATGAGAGACAAGAAATTCAGATGAAGAAAGCAAAACTAATCAGCATGCTTGATGAGGTGGAACAAAGGTATAGGCAATACCACAACCAGATGCAGATTGTGATTTCATTGTTCGAACAAGCTGCGGGAATTGGTTCTGCCAGAACATACACTGCTCTTGCATTGCAAACAATCTCTAAGCAGTTTCGGTGTTTGAAAGATGCTATAACAAGCCAAATTAGAGCTGCAAATAAGAGCTTAGGAGAAGAGGATTGCTTTGGAGGCAAAATTGAAGGTTCGAGGCTGAAATATGTAGACAATCAGCTACGGCAACAACGAGCTATCCAACAATTGGGAATGATCCATCACAATGCTTGGAGACCCCAAAGAGGATTGCCTGAAAGATCAGTTTCTGTCTTGCGTGCTTGGCTCTTTGAACACTTCCTCCACCCTTATCCCAAGGATTCAGACAAACACATGCTTGCAAAACAAACAGGGCTTACCAGGAGCCAGGTTTCAAACTGGTTCATAAATGCTCGAGTTAGGCTTTGGAAGCCAATGGTGGAAGAAATGTACGTAGAGGAGATGAAGGAGAATGAACCTAATGGGTCTGAGGACAAATCAAGCAAGAGTGGTGAAGATTCTGCTATGAAAAAACCAACTCCACAAGAGAGGTGTCCTACTTCTGAAACTGAATCTAAGAGTTTCAATTCCAAACAAGACATTTCTAAAATCCAGAACAATAATCCAATAGTTTCAGTTTCTACACCATCAACATCACCTGTTATGGGAAATGTCAGAAACCAACCAGGATTCAGCTTCATTGGATCATCAGAACTAGATGGAATCACACAAGGGAGTCCCAAGAAACCAAGGAACCATGAAATTCTGCAGTCACCAAATCGTGTCTCTTCATTTAACATGGATGTCAAACCCAATAATGCAAACAATGAACAACTCTCCATGAAATTTGGAGATGAGAGACAGAGCAGAGATGGCTACTCTTTCATGGGAAACCAAACAAACTTCATTGGTGGTTTCGGACAATACCCAATTGAAGAAATTGGTAGGTTTGATGCAGAGCAATTCACACCAAGGTTTTCTTCAGGTAATGGAGTTTCCCTCACTCTTGGTCTTCCTCATTGTGACACATTATCAGGAACCCATCAAACATTTCTCCCAAACCAGAACATTCAACTAGGAAGAAGATTGGACATGAGTGAACCAAACGAGTTTGGTGCCATAAGCTCTTCCACTTCTCACTCTTCTTCAGCTGCATTTGAGAGTATCAATATGCAGAATCCAAAGAGGTTTGCTGCACAATTATTGCCAGACTTTGTGGCTCAAATAAGACATTGA 2058 0.4553 MATYFHSNSEIQGGADGLQTLILMNPGYLHYSDTPPPQPPPPHGGNLVFLNSAATMAGNNSLASQSISHAPPSHTQQFVGVPLSSASEEPSIHAHHDVSALHGFLPRMQYNLWNSIDPNAAAAAARETSRAATQGLSLSLQAQPPAVSCDEVRVSGGSPSSASGVTNGVSGIQSVLMSSKYLKATQELLDEVVNVNNGIKEPAKKGFDKIKVVGESSTGASGDGSIGGDGSGKLSSEISTNERQEIQMKKAKLISMLDEVEQRYRQYHNQMQIVISLFEQAAGIGSARTYTALALQTISKQFRCLKDAITSQIRAANKSLGEEDCFGGKIEGSRLKYVDNQLRQQRAIQQLGMIHHNAWRPQRGLPERSVSVLRAWLFEHFLHPYPKDSDKHMLAKQTGLTRSQVSNWFINARVRLWKPMVEEMYVEEMKENEPNGSEDKSSKSGEDSAMKKPTPQERCPTSETESKSFNSKQDISKIQNNNPIVSVSTPSTSPVMGNVRNQPGFSFIGSSELDGITQGSPKKPRNHEILQSPNRVSSFNMDVKPNNANNEQLSMKFGDERQSRDGYSFMGNQTNFIGGFGQYPIEEIGRFDAEQFTPRFSSGNGVSLTLGLPHCDTLSGTHQTFLPNQNIQLGRRLDMSEPNEFGAISSSTSHSSSAAFESINMQNPKRFAAQLLPDFVAQIRH 685
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi509g00008 685 Gene3D - 355 433 - -
Gabi509g00008 685 CDD homeodomain 359 420 IPR001356 GO:0003677
Gabi509g00008 685 FunFam BEL1-like homeodomain protein 9 362 424 - -
Gabi509g00008 685 SMART prehox3 170 311 IPR006563 -
Gabi509g00008 685 Pfam Homeobox KN domain 376 415 IPR008422 GO:0003677|GO:0006355
Gabi509g00008 685 MobiDBLite consensus disorder prediction 217 236 - -
Gabi509g00008 685 Pfam Associated with HOX 175 310 IPR006563 -
Gabi509g00008 685 Coils Coil 243 270 - -
Gabi509g00008 685 SMART HOX_1 359 423 IPR001356 GO:0003677
Gabi509g00008 685 MobiDBLite consensus disorder prediction 455 497 - -
Gabi509g00008 685 SUPERFAMILY Homeodomain-like 360 426 IPR009057 -
Gabi509g00008 685 ProSiteProfiles 'Homeobox' domain profile. 356 419 IPR001356 GO:0003677
Gabi509g00008 685 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 83 444 - -
Gabi509g00008 685 MobiDBLite consensus disorder prediction 428 497 - -
Gabi509g00008 685 MobiDBLite consensus disorder prediction 428 453 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi509g00008 Gabi-Chr509 108037 111892 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi509g00008 1 681 Homeobox Transcription Factor Family AT2G35940 49.204 2.72e-178 522
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Gabi509g00008 POX 1.3e-47 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi509g00008 - - gmx:100791773 1001.5