Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi509g00005 ATGGCGACGTACTTTCATAGTAATTCAGAAATCCAAGGTGGTGCTGATGGCCTTCAAACTCTTATACTCATGAACCCTGGCTATTTACACTACTCAGACACGCCGCCGCCGCAGCCTCCGCCACCACATGGCGGAAACCTTGTATTCCTCAACTCTGCTGCCACTATGGCCGGAAATAACTCTCTTGCCTCACAAAGTATCTCTCACGCGCCGCCCTCTCACACCCAACAATTTGTCGGCGTGCCACTCTCTTCTGCCTCCGAGGAGCCGTCCATACATGCCCATCACGACGTCTCCGCCTTGCATGGGTTCCTGCCACGCATGCAGTACAATCTATGGAACTCAATAGACCCCAACGCAGCGGCGGCGGCGGCGCGTGAGACATCACGCGCAGCCACTCAGGGACTGTCGCTGAGCCTGCAGGCTCAGCCGCCTGCAGTGTCCTGCGACGAGGTGCGCGTGTCTGGTGGGTCACCATCTTCTGCTTCTGGGGTAACCAATGGTGTTTCGGGTATTCAGAGTGTGCTTATGAGTTCCAAGTATTTGAAGGCAACCCAGGAACTTCTTGACGAGGTTGTGAATGTTAACAATGGCATCAAGGAACCTGCAAAGAAGGGATTTGACAAGATTAAGGTTGTTGGGGAATCATCAACTGGAGCTAGTGGAGACGGTTCAATTGGTGGGGATGGAAGTGGAAAGCTTAGCTCTGAGATATCAACTAATGAGAGACAAGAAATTCAGATGAAGAAAGCAAAACTAATCAGCATGCTTGATGAGGTGGAACAAAGGTATAGGCAATACCACAACCAGATGCAGATTGTGATTTCATTGTTCGAACAAGCTGCGGGAATTGGTTCTGCCAGAACATACACTGCTCTTGCATTGCAAACAATCTCTAAGCAGTTTCGGTGTTTGAAAGATGCTATAACAAGCCAAATTAGAGCTGCAAATAAGAGCTTAGGAGAAGAGGATTGCTTTGGAGGCAAAATTGAAGGTTCGAGGCTGAAATATGTAGACAATCAGCTACGGCAACAACGAGCTATCCAACAATTGGGAATGATCCATCACAATGCTTGGAGACCCCAAAGAGGATTGCCTGAAAGATCAGTTTCTGTCTTGCGTGCTTGGCTCTTTGAACACTTCCTCCACCCTTATCCCAAGGATTCAGACAAACACATGCTTGCAAAACAAACAGGGCTTACCAGGAGCCAGGTTTCAAACTGGTTCATAAATGCTCGAGTTAGGCTTTGGAAGCCAATGGTGGAAGAAATGTACGTAGAGGAGATGAAGGAGAATGAACCTAATGGGTCTGAGGACAAATCAAGCAAGAGTGGTGAAGATTCTGCTATGAAAAAACCAACTCCACAAGAGAGGTGTCCTACTTCTGAAACTGAATCTAAGAGATTCAGCTTCATTGGATCATCAGAACTAGATGGAATCACACAAGGGAGTCCCAAGAAACCAAGGAACCATGAAATTCTGCAGTCACCAAATCGTGTCTCTTCATTTAACATGGATGTCAAACCCAATAATGCAAACAATGAACAACTCTCCATGAAATTTGGAGATGAGAGACAGAGCAGAGATGGCTACTCTTTCATGGGAAACCAAACAAACTTCATTGGTGGTTTCGGACAATACCCAATTGAAGAAATTGGTAGGTTTGATGCAGAGCAATTCACACCAAGGTTTTCTTCAGGTAATGGAGTTTCCCTCACTCTTGGTCTTCCTCATTGTGACACATTATCAGGAACCCATCAAACATTTCTCCCAAACCAGAACATTCAACTAGGAAGAAGATTGGACATGAGTGAACCAAACGAGTTTGGTGCCATAAGCTCTTCCACTTCTCACTCTTCTTCAGCTGCATTTGAGAGTATCAATATGCAGAATCCAAAGAGGTTTGCTGCACAATTATTGCCAGACTTTGTGGCTCAAATAAGACATTGA 1950 0.461 MATYFHSNSEIQGGADGLQTLILMNPGYLHYSDTPPPQPPPPHGGNLVFLNSAATMAGNNSLASQSISHAPPSHTQQFVGVPLSSASEEPSIHAHHDVSALHGFLPRMQYNLWNSIDPNAAAAAARETSRAATQGLSLSLQAQPPAVSCDEVRVSGGSPSSASGVTNGVSGIQSVLMSSKYLKATQELLDEVVNVNNGIKEPAKKGFDKIKVVGESSTGASGDGSIGGDGSGKLSSEISTNERQEIQMKKAKLISMLDEVEQRYRQYHNQMQIVISLFEQAAGIGSARTYTALALQTISKQFRCLKDAITSQIRAANKSLGEEDCFGGKIEGSRLKYVDNQLRQQRAIQQLGMIHHNAWRPQRGLPERSVSVLRAWLFEHFLHPYPKDSDKHMLAKQTGLTRSQVSNWFINARVRLWKPMVEEMYVEEMKENEPNGSEDKSSKSGEDSAMKKPTPQERCPTSETESKRFSFIGSSELDGITQGSPKKPRNHEILQSPNRVSSFNMDVKPNNANNEQLSMKFGDERQSRDGYSFMGNQTNFIGGFGQYPIEEIGRFDAEQFTPRFSSGNGVSLTLGLPHCDTLSGTHQTFLPNQNIQLGRRLDMSEPNEFGAISSSTSHSSSAAFESINMQNPKRFAAQLLPDFVAQIRH 649
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi509g00005 649 Pfam Associated with HOX 175 310 IPR006563 -
Gabi509g00005 649 MobiDBLite consensus disorder prediction 455 481 - -
Gabi509g00005 649 CDD homeodomain 359 420 IPR001356 GO:0003677
Gabi509g00005 649 MobiDBLite consensus disorder prediction 488 515 - -
Gabi509g00005 649 FunFam BEL1-like homeodomain protein 9 362 424 - -
Gabi509g00005 649 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 83 444 - -
Gabi509g00005 649 SMART prehox3 170 311 IPR006563 -
Gabi509g00005 649 MobiDBLite consensus disorder prediction 217 236 - -
Gabi509g00005 649 SUPERFAMILY Homeodomain-like 360 426 IPR009057 -
Gabi509g00005 649 MobiDBLite consensus disorder prediction 428 515 - -
Gabi509g00005 649 Coils Coil 243 270 - -
Gabi509g00005 649 SMART HOX_1 359 423 IPR001356 GO:0003677
Gabi509g00005 649 ProSiteProfiles 'Homeobox' domain profile. 356 419 IPR001356 GO:0003677
Gabi509g00005 649 Pfam Homeobox KN domain 376 415 IPR008422 GO:0003677|GO:0006355
Gabi509g00005 649 Gene3D - 355 433 - -
Gabi509g00005 649 MobiDBLite consensus disorder prediction 428 453 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi509g00005 Gabi-Chr509 108037 111894 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi509g00005 1 645 Homeobox Transcription Factor Family AT2G35940 51.393 0.0 533
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Gabi509g00005 POX 1.2e-47 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi509g00005 - - gmx:100791773 945.266