Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi509g00002 ATGGATGAAATTGAAGTTCCTCAGTATTTCATATGCCCAATATCCCTACAAATCATGAAAGATCCAGTTACTGCTATAACAGGAATAACATACGACCGAGACAGCATTGAGCATTGGCTATTCTCAAACAAGAACACAACATGTCCAGTTACCAAACAACCTCTCCCAAGAGACTCTGACTTAACCCCTAATCACACCCTTCGCCGTTTGATTCAAGCTTGGTGCACCCAAAATGCTTCACTTGGCATTGATCGAATTCCAACCCCTAAACCACCACTTAACAAGATACAAGTCCTTAAGCTTCTCAAAAACCTCACAGTCACAGACCCCAATTTGAAGCTCAAAAGTCTCAGAAAATTGGAGTTGCTTGCTGCAGAGAACGAGAGGAATAAGAAGTGTTTGCTAGAGGCAGGTGTTCCAAAAGCCACGATCTTTTTCATAGTGGGTTGTTTTATAAAGGGTCAAATTCATGAGGGTCTTGAAGAAGCTCTAAGTTTATTGCAGTTTGTTAAGGTTCCTGCAGAAGAAGTGAACCTGCTTCTAGCGGAAAATGATCAAATTTTGGATTCTCTAGCATGGGTTTTGGGTTGTGAAATGGAAAATTCCATTGCTGTGAAATCTCATGCGGTTTTAGTCCTCAAAAGAATCATCCAAAAGGGTGACCCTAGTGTTCTTGAGAGACTGAAAGTTGAGTTCTTTGATAAGATTGTGAAGATTCTACGAAATGGGGTTACCCAAAAAGGGATGAATGCTGCTCTGCATGTCTTGTTACGTGCTTGTCCATGGGGACGAAACAGGATCATGATGGTGGAAATTGGTGCTGTTTTTGAACTCGTTGAGATTGAATTAATGGCACCAGAGAAGAGAAACACAGAGCTTGCACTTGCTATACTTTTCCATTTGTGTTCTTGTGCCAATGGTAGAGCTCAGTTTCTGAGTCACAAAGGCTCAATTGCCATGTTAACGGATCGAATTTTGAAGGTTTCTGCAGAAGTGGATGAAAGAGCCGTATTTGTTCTCTCACTGATATCTAAATTCTCTGCCACAAAAATGGTCCTGCAAGACATGTTAAACGTTGGAACTGTGTCAAAGCTTTGCATGTTGCTTCAAGCTGATCATGCTAAATATCTAAAAGACAAAGCTATCGAAATTCTAAAGTCTCACTCTGAGGTTTGGAAGAATTCTCCTTGCTTTTCTGATCCGTCTTTTCATGCAAGTTTGGGGATTTAG 1230 0.4081 MDEIEVPQYFICPISLQIMKDPVTAITGITYDRDSIEHWLFSNKNTTCPVTKQPLPRDSDLTPNHTLRRLIQAWCTQNASLGIDRIPTPKPPLNKIQVLKLLKNLTVTDPNLKLKSLRKLELLAAENERNKKCLLEAGVPKATIFFIVGCFIKGQIHEGLEEALSLLQFVKVPAEEVNLLLAENDQILDSLAWVLGCEMENSIAVKSHAVLVLKRIIQKGDPSVLERLKVEFFDKIVKILRNGVTQKGMNAALHVLLRACPWGRNRIMMVEIGAVFELVEIELMAPEKRNTELALAILFHLCSCANGRAQFLSHKGSIAMLTDRILKVSAEVDERAVFVLSLISKFSATKMVLQDMLNVGTVSKLCMLLQADHAKYLKDKAIEILKSHSEVWKNSPCFSDPSFHASLGI 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi509g00002 409 Pfam U-box domain 6 78 IPR003613 GO:0004842|GO:0016567
Gabi509g00002 409 SUPERFAMILY ARM repeat 100 387 IPR016024 -
Gabi509g00002 409 SUPERFAMILY RING/U-box 3 83 - -
Gabi509g00002 409 Coils Coil 117 137 - -
Gabi509g00002 409 ProSiteProfiles U-box domain profile. 5 81 IPR003613 GO:0004842|GO:0016567
Gabi509g00002 409 PANTHER WDSAM1 PROTEIN 3 399 IPR045185 GO:0061630
Gabi509g00002 409 Gene3D - 87 397 IPR011989 -
Gabi509g00002 409 FunFam RING-type E3 ubiquitin transferase 1 84 - -
Gabi509g00002 409 CDD RING-Ubox_PUB 7 58 IPR045210 -
Gabi509g00002 409 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 82 IPR013083 -
Gabi509g00002 409 SMART Ubox_2 9 74 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi509g00002 Gabi-Chr509 32550 33779 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi509g00002 2 398 U-box Gene Family AT3G11840 42.141 2.03e-115 343
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi509g00002 - - lja:Lj0g3v0014579.1 597.045