Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi5085g00001 ATGGGAAACAATTGTGTTGGATCGAGAAACTCGAAAGATGGAGTATTTCCCTCGTTTCTTTCGAGTTCATTCTGTTGTTGGTCACAGCCAACGATTGAAGGGGTTTCACTTGAATACGTGGAAATTTCTTGTGCACCTTCACTTGTGAGTAAAAGGGCAAATCCAAATGATCCAGATACTGTTCATCAAAAGCCTCCTGAGGTAGTGAAATTTGACAACAAGGAGATGAAGCAGGTGCAACAGACAACATATAAAGAGAGCAATAAACCTTCAGAGGAACAAATAAAGCACGTGGAACAGAACACCATTCCTCCTAAGAACAGCCTTGGTATATTTACACCTACCTGGTTCACAGCTGCTACATTTCTAAGGAAAGATGACCATCGAAAATTTGTTGCTGGCACCAACAACCATCAGGTTTTCCTTAAGCAGCATATTACCCTAAACCACGTAGAAATTTATTGTGCACCTTCACTTGTGAGTAAAAGGCCAAATCCAAATGATCCAGAGACTGTTCATCAAAAGCCTCTTGAGGTAGTGAAATTTGACAACAAGGAGATGAAGCAGGTGCAGCAGACAACAGATAAAGAGAGCAATAAACCTTCAGAGGAACAAATAAAGCACGTGGAACATAACACCATTGTACTAGAGCCAGTTAGGCAGAAGGAACATACTAGACCAGCAGAGCCAGCAAAACGAGAAAAGTTCCATAATGTTAAGATGCAATCAATTGCTGGGCTTCAAGTAGATTCGGTTTTGCAGAGAAAAACGGGTTATCTTAAGGAGTACTACAATCTGGGACCAGAACTTGGGCAAGGACATTATGGAACCACTTTCCTTTGTTGGGAGAAAGCTACTGGGAACAAGTATGCCTGCAAGTCCATTCCTAAAGAAAAAATGGTGACAGATGATGATGTGGAGGATGTGAGGAGGGAGATTCAGATAATGCATCACTTGGCAGGTATTCCCAATGTTGTTTCCATTAAAGGGGCTTATGAGGATGCTGTTTCGGTTCATGTCGTTATGGAATTATGTGAAGGGGGTGAGCTTTATGATAGGATTGTGGGAAAGGGATATTACACGGAAAGAAAGGCAGCTAAACTTGCAAGGACTATAGTTAGTGTTGTTAAGGATTGCCACGCCCTTGGAGTAATACATCTTGATCTTAAGCCTGAGAATTTTCTTTTCGTTAATGGCCATGAAGACTCCACCCTTAAGGCAATAGATTTTGGATTGTCTGTTTTCTTTAAACCAGGAGATGTTTTCAAGGATCCGGTTGGAAGTCCTTTTTATATAGCACCTGAAGTTCTAGGCAAACGTTATGGCCCAGAAGCTGATGTCTGGAGTGCTGGTGTGATCATATACATTCTCTTATGCGGAACACCTCCATTTTGGGGTGGAACAGAGCGAGAAATATATTGGAATGTTTTGCATGGTGATCTTAATTTCTCTTCAGATCCTTGGCTGTATATATCTGAAAGTGCAAAAGACTTGATTAGGAAGATGCTTGTTAGAGATCCTAAACAAAGGATAACAGTTGATGAAGTTCTTCGTCACCCTTGGTTTCAGGTTGATGGAGGTGCGCCTCTTGATTCTGCAGCTTTGAGTCGCCTGAAGCAGTTTTCTTTAATGAAAAAGCTCAAGAAAACGGCTTTTACAATTATTGCACAGAATCTTTCTGAAGAAGAAATTTCTGGTTTGAAAGAAATGTTTAAGAAGATAGATACTGACAACAGTGGTCAAATAAGTTTTGAAGAACTCAAGGTTGGACTGAAAACGTTTGGTGCTAATCTCAGGGGATCTGAAATTTTCGATCTAATGCAAGCTGCAGATGTTGATAACAGTGGTACAATAGACTATGGAGAATTCATAGATGCAACATTGCATTTAAACAAAGTTGATATGGAAGATCATTTTGTTGATGCATTCTTATATTTTGATAAAGACGATAGTGGCCACATCACTCAAGGTAAGCTTCAAGCTTGTGAAGAATTTGGCACGCAGGATGTCCTCTCAACAAGTTTAACATGA 2031 0.4028 MGNNCVGSRNSKDGVFPSFLSSSFCCWSQPTIEGVSLEYVEISCAPSLVSKRANPNDPDTVHQKPPEVVKFDNKEMKQVQQTTYKESNKPSEEQIKHVEQNTIPPKNSLGIFTPTWFTAATFLRKDDHRKFVAGTNNHQVFLKQHITLNHVEIYCAPSLVSKRPNPNDPETVHQKPLEVVKFDNKEMKQVQQTTDKESNKPSEEQIKHVEHNTIVLEPVRQKEHTRPAEPAKREKFHNVKMQSIAGLQVDSVLQRKTGYLKEYYNLGPELGQGHYGTTFLCWEKATGNKYACKSIPKEKMVTDDDVEDVRREIQIMHHLAGIPNVVSIKGAYEDAVSVHVVMELCEGGELYDRIVGKGYYTERKAAKLARTIVSVVKDCHALGVIHLDLKPENFLFVNGHEDSTLKAIDFGLSVFFKPGDVFKDPVGSPFYIAPEVLGKRYGPEADVWSAGVIIYILLCGTPPFWGGTEREIYWNVLHGDLNFSSDPWLYISESAKDLIRKMLVRDPKQRITVDEVLRHPWFQVDGGAPLDSAALSRLKQFSLMKKLKKTAFTIIAQNLSEEEISGLKEMFKKIDTDNSGQISFEELKVGLKTFGANLRGSEIFDLMQAADVDNSGTIDYGEFIDATLHLNKVDMEDHFVDAFLYFDKDDSGHITQGKLQACEEFGTQDVLSTSLT 676
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi5085g00001 676 ProSitePatterns EF-hand calcium-binding domain. 611 623 IPR018247 -
Gabi5085g00001 676 ProSitePatterns Serine/Threonine protein kinases active-site signature. 384 396 IPR008271 GO:0004672|GO:0006468
Gabi5085g00001 676 ProSitePatterns Protein kinases ATP-binding region signature. 270 293 IPR017441 GO:0005524
Gabi5085g00001 676 Gene3D Phosphorylase Kinase; domain 1 267 349 - -
Gabi5085g00001 676 Pfam EF hand 567 593 IPR002048 GO:0005509
Gabi5085g00001 676 SMART efh_1 602 630 IPR002048 GO:0005509
Gabi5085g00001 676 SMART efh_1 566 594 IPR002048 GO:0005509
Gabi5085g00001 676 FunFam Calcium-dependent protein kinase 1 266 349 - -
Gabi5085g00001 676 Gene3D Transferase(Phosphotransferase) domain 1 350 527 - -
Gabi5085g00001 676 Pfam Protein kinase domain 265 522 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi5085g00001 676 CDD STKc_CAMK 264 521 - -
Gabi5085g00001 676 ProSiteProfiles EF-hand calcium-binding domain profile. 598 633 IPR002048 GO:0005509
Gabi5085g00001 676 FunFam Calmodulin-2 A 556 669 - -
Gabi5085g00001 676 Gene3D - 535 628 - -
Gabi5085g00001 676 ProSiteProfiles EF-hand calcium-binding domain profile. 562 597 IPR002048 GO:0005509
Gabi5085g00001 676 PANTHER SERINE/THREONINE-PROTEIN KINASE 252 661 - -
Gabi5085g00001 676 SUPERFAMILY Protein kinase-like (PK-like) 262 523 IPR011009 -
Gabi5085g00001 676 MobiDBLite consensus disorder prediction 187 207 - -
Gabi5085g00001 676 FunFam Calcium-dependent protein kinase 5 350 530 - -
Gabi5085g00001 676 CDD EFh 567 626 IPR002048 GO:0005509
Gabi5085g00001 676 SMART serkin_6 264 522 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi5085g00001 676 Gene3D - 545 662 - -
Gabi5085g00001 676 SUPERFAMILY EF-hand 548 660 IPR011992 -
Gabi5085g00001 676 Pfam EF-hand domain pair 598 629 IPR002048 GO:0005509
Gabi5085g00001 676 ProSitePatterns EF-hand calcium-binding domain. 575 587 IPR018247 -
Gabi5085g00001 676 ProSiteProfiles Protein kinase domain profile. 264 522 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi5085g00001 Gabi-Chr5085 351 4240 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi5085g00001 157 670 EF-hand Containing Proteins AT3G10660 61.754 0.0 663
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Gabi5085g00001 Pkinase 1.2e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi5085g00001 K13412 - gmx:100814475 688.723