Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi5083g00001 CCGCCATGGAAGATGTATAGAATAATATCCACGCCGGCGTCTAAGTTCCGCCAATTCCGGCGACTCCGGTCGAGACCCACAACCGCGGCGACCGACGAGGAACAGGCTCACCACATCCTATGGAGATATCAGATCCTGGACCCAGACAGCGACATCGTAGCATATTGGAACAAGGTATTCCTTGTGACAAGCCTCCTCGCACTCTTCGTCGATCCTCTCTACTTCTTCCTCCCAACCGTTGGTGGACCCGCTTGCTTGACGGCAGACCCCAAACTCAGCATCTTGGTTACCCTCATTCGCTCCTTCGCCGACCTTTTCTATGTCCTCCACATGGTTATGAAGTTCCGTACCGCATTTGTCGCCCCCAATTCTAGAATCTTCGGTCGCGGTGAGCTCGTCATGGATGGGCGCGAGATCGCAATACGCTACTTGAAGAGTGATTTTGTCATTGACCTTGCTGCTACCATCCCACTCCCTCAGATTGTGATTTGGTTAGTTATTCCAGCGAGTAGAAACGCAAGAACTGATCATGCCAACAACACTCTTGCACTTTTTGTTCTTATTCAGTATGTTCCTAGGCTTTTTCTTATCTTTCCTTTGAACCAGCGTATTCAGAAAACAACTGGCGTTATTGCCAAGACTCCCTGGATTGGAGCTGCTTACAATCTTGTTCTCTACATGCTAGCTAGCCATATTACAGGAGCAACTTGGTATCTATCGTCAATAGGGAGACAATTTAATTGCTGGAAAACACAGTGCGAACAGGAAAACAGATCACATACCCTGTCTTGCTTACCTAGTTTTCTTGATTGTAATAGTTTGGACCTCCCTGAAAGGCAATTTTGGCTAAATATCACCCGTGTTATTAGCAAATGCGATGCAAAGAGCAAGATCAATATCAAATATAAGTTTGGGATGTTTGCTGATGCTTTCCTAAATGATGTTGTCACTTCCAATTTTAAGGAAAGATACTTCTATTGTCTTTGGTGGGGTTTAAGAAATTTAAGCTCATATGGACAGAATTTGGACACCACCACATACCTTCTGGAGACACTTTTTTGCATCGTTTTATGCATTGCTGGATTAATTCTGTTTTCACTTTTGATTGGAAACATGCAGACGTACTTGCAATCGATGTCAGTTAGACTTGAAGAATGGAGGATTCGGAAAAAAGATACAGAGGAGTGGATGAGGCATCGCCAGTTACCTCAAGATCTGCAGGAACGTGTCCGTCGCTTTGTTCAATATAAATGGCTTGCAACAAGAGGAGTTAATGAAGAGGCCATACTGCTTTCTTTACCTTTGGATCTTCGTCGTGAAATTCAACATCACTTGTGTCTTTCTCTTGTGCGGCGTGTCCCCTTCTTCTCACAAATGGACGATCAGCTACTTGATGCCATTTGTGAACGACTTGTGTCATCATTAAACACTGAAGGGACCTACATATTTCGAGAGGGTGATCCAGTAGATGAAATGCTGTTTATCATTAGAGGGCAATTAGAGAGCTCCACAACCAATGGAGGAAGGTCTGGATTCTTCAATTCCATCACACTCAGGCCTGGTGACTTTTGTGGAGAGGAATTGTTGACATGGGCCTTAATGCCAAACTCAACCCTCAACCTACCTTCTTCTACTCGTTCTGTCAAAGCTCTTACTGAAGTTGAAGCTTTTGCACTAGAAGCAGAGGATCTGAAATTTGTGGCAAGTCAGTTCAAGCGCCTTCACAGCATGAAACTTCAGCATGCGTTTAGGTATTATTCCCATCAATGGAGGACATGGAGTGCTTGCTTCATACAAACTGCTTGGAGAAGGCATCAGAAAAGGAAAGCAACAAGGGAGTTGTCCCTCAAAGAGGGCCTCTACTACATGGCTATGCCTGAAAGCGAGAGTGATAGTTACATTGTAAGCGAGATCGAGGGATCGTCAGGGAATATGAAAAAGGTTCAAAATATTGGTGCAACTGTTTTGGCCTCAAAATTTGCTGCCAATACGAGGAAAGGGAACAATAAGATTCACGGCAGTGATCCTGTGCCGCAATTGTTCAAGCCAGATGAACCTGATTTCTCTTTAGACCATGAGGAAGTTTAG 2088 0.4449 PPWKMYRIISTPASKFRQFRRLRSRPTTAATDEEQAHHILWRYQILDPDSDIVAYWNKVFLVTSLLALFVDPLYFFLPTVGGPACLTADPKLSILVTLIRSFADLFYVLHMVMKFRTAFVAPNSRIFGRGELVMDGREIAIRYLKSDFVIDLAATIPLPQIVIWLVIPASRNARTDHANNTLALFVLIQYVPRLFLIFPLNQRIQKTTGVIAKTPWIGAAYNLVLYMLASHITGATWYLSSIGRQFNCWKTQCEQENRSHTLSCLPSFLDCNSLDLPERQFWLNITRVISKCDAKSKINIKYKFGMFADAFLNDVVTSNFKERYFYCLWWGLRNLSSYGQNLDTTTYLLETLFCIVLCIAGLILFSLLIGNMQTYLQSMSVRLEEWRIRKKDTEEWMRHRQLPQDLQERVRRFVQYKWLATRGVNEEAILLSLPLDLRREIQHHLCLSLVRRVPFFSQMDDQLLDAICERLVSSLNTEGTYIFREGDPVDEMLFIIRGQLESSTTNGGRSGFFNSITLRPGDFCGEELLTWALMPNSTLNLPSSTRSVKALTEVEAFALEAEDLKFVASQFKRLHSMKLQHAFRYYSHQWRTWSACFIQTAWRRHQKRKATRELSLKEGLYYMAMPESESDSYIVSEIEGSSGNMKKVQNIGATVLASKFAANTRKGNNKIHGSDPVPQLFKPDEPDFSLDHEEV 695
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi5083g00001 695 SUPERFAMILY cAMP-binding domain-like 385 577 IPR018490 -
Gabi5083g00001 695 SMART cnmp_10 455 586 IPR000595 -
Gabi5083g00001 695 Gene3D Jelly Rolls 453 573 IPR014710 -
Gabi5083g00001 695 CDD CAP_ED 455 586 IPR000595 -
Gabi5083g00001 695 Gene3D - 62 378 - -
Gabi5083g00001 695 ProSiteProfiles cAMP/cGMP binding motif profile. 455 565 IPR000595 -
Gabi5083g00001 695 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 25 688 - -
Gabi5083g00001 695 Pfam Cyclic nucleotide-binding domain 478 566 IPR000595 -
Gabi5083g00001 695 FunFam Cyclic nucleotide-gated ion channel 1 453 571 - -
Gabi5083g00001 695 Pfam Ion transport protein 55 382 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Gabi5083g00001 695 Gene3D Helix hairpin bin 379 446 - -
Gabi5083g00001 695 SUPERFAMILY Voltage-gated potassium channels 47 377 - -
Gabi5083g00001 695 MobiDBLite consensus disorder prediction 667 695 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi5083g00001 Gabi-Chr5083 14013 17500 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi5083g00001 14 695 Ion Channels AT5G14870 67.842 0.0 999
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi5083g00001 K05391 - gmx:100802812 1270.37