Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi5081g00006 ATGTCTTCCCATGATGGTAGCACGCTGCCCTTAAACGTCACCATGGTTGCTGTAGACAAAGACAAGAACAGTGGCCATGCCTTCCGTTGGACAACTAATCATTTTGATAACTCAATCATCATCGCCGTCCATGTCAAGCACAAAAACAATATTATTCCTCATCAGGGCACCAATGTTTTTCCTCCGGACGAAGACGACATGGACAATGTTTTCAATCCCTTACGTCAAATGTGTCGTCATAAAGTTGTTATGTTGAAAGAAGCTGTAATCGATGATAATGATGTTGTCAGAGGAATTTTGGAATATGCACATAGGAATCACATTCATACTATCGTTGTTGGTGCACCCTCCTCGACCAAGAACACTTTGGCAAGAAAATTTAAAGGCAATAATGTGGCTACAGCCATAATCAAATCAGCCCCAGAATACAGTTCAGTGTACGTAATTTCAAAAGAGAAGATAGTGGGAACTCGACCAGCACTACGACCAAGGGTAAACGGGGTTGGACCACCAAAACAACTAACAGGACATGCACCTAGTGAATTGGAAAATGGAGTGAGGTCACAAACACTTAGAGTAGGGGTCACCAGTGGAAGATCAGAAAGATCACATCTACATGAGAAGTCAAGAACTTCTTCATCAAGTCAGTCAATGGATAGTTTTGATCTCTCCAACCGTGGACAGAGGTCATCATATGGCCATGACTCAAGCTCGGATGAAAGTGATTCTTCAGGGTTTGCATCAGATTCTCAATCTTCAGTAAGTGGAGAGATAGAAGCTGAGATGAAAAGATTGAAGCTCCAACTGAAGCGAACTATGAACATGTACAACTCAGCTTGCAAAGAAGCAATCTCAGCCCAAAACAAGGCTAAGGAGATTAATCAATGGAAACTGGAGGAGGCACGTAAGGTTGAGGAAGCTAAGATGTCTAAAGAAGCAGCTCTTGCATTGGCAAAAAAGGAGAAGGCTAAAGCAAAAGCTGCCTTAGAAGCAGCTGAGGAAGCTATGAAGATGGCTGAAAAGGAAGCACAGAGAAGATTGCATGCAGAGATGAAGGCCAAGAGAGAGGCAGAAGAGAAGGATAGGGCATTAACTGCGTTGGCTCAAAATGATAAACGATATAGAAAATACACCATAGAGGAAATTGAACATGCCACTCAAAAGTTCTCCCCATCAAAGAAAATAGGTGAAGGTGGATATGGACCTGTGTTTAAAGCCCAACTTGATCACACCCCAGTCGCAATCAAAATTTTAAACCCTGATGCTTCCCAGGGCAGGGAGCAGTTCCAACAAGAGGTTGAGGTATTATGCAGCATTAGGCATCCTAATATGGTTCTCCTCCTTGGTGCATGTCCTGAGTATGGATGCTTGGTGTATGAATACATGGAGAATGGTAGCTTAGAAGACAGATTGCTTCGGAAACATAACAGCCCTCCTATTCCATGGAGGAAACGTTTCGAAATAGCTGCTGAGATTGCAACTTCACTCCTTTTTCTTCACCAAGCAAAGCCAGAACCCCTTGTGCACAGGGACCTTAAACCAGCCAACATTCTCTTGGACAAAAATTTTGTCAGTAAAATAAGTGATGTTGGTCTTGCAAGACTAGTTCCACCTTCTGTAGCAGATTCTGTCACACAATATCACATGACTTCAGCTGCTGGAACCTTTTGTTACATTGATCCTCAGTATCAACAAACAGGAATGTTAACAACCAAATCAGATATATATTCTTTGGGGATAACGCTAATGCAGATAATCACAGCCAAGCCTCCTATGGGGCTTGCTCACCAAGTCAAAAGGGCAATTGAAAAAGGAACATTTTCTAATATGCTTGATCCTGGGGTGACTGATTGGCCAGTTGAAGAGGCCGTAGCATTTGCCAAACTCTCAGTGAGCTGTGCAGAACTCAGCAAGAAGGATAGGCCAGATCTTGCATCAGTAATAGTGCCAGAGCTTAATCGTTTAAGAGACTTTGGGTACAGATTACATAATAATCAGAATTGTAGCCACTCACCACGCCCTCCTACGCCTACACGAGGTCCACATTCAAAGACATAA 2058 0.4291 MSSHDGSTLPLNVTMVAVDKDKNSGHAFRWTTNHFDNSIIIAVHVKHKNNIIPHQGTNVFPPDEDDMDNVFNPLRQMCRHKVVMLKEAVIDDNDVVRGILEYAHRNHIHTIVVGAPSSTKNTLARKFKGNNVATAIIKSAPEYSSVYVISKEKIVGTRPALRPRVNGVGPPKQLTGHAPSELENGVRSQTLRVGVTSGRSERSHLHEKSRTSSSSQSMDSFDLSNRGQRSSYGHDSSSDESDSSGFASDSQSSVSGEIEAEMKRLKLQLKRTMNMYNSACKEAISAQNKAKEINQWKLEEARKVEEAKMSKEAALALAKKEKAKAKAALEAAEEAMKMAEKEAQRRLHAEMKAKREAEEKDRALTALAQNDKRYRKYTIEEIEHATQKFSPSKKIGEGGYGPVFKAQLDHTPVAIKILNPDASQGREQFQQEVEVLCSIRHPNMVLLLGACPEYGCLVYEYMENGSLEDRLLRKHNSPPIPWRKRFEIAAEIATSLLFLHQAKPEPLVHRDLKPANILLDKNFVSKISDVGLARLVPPSVADSVTQYHMTSAAGTFCYIDPQYQQTGMLTTKSDIYSLGITLMQIITAKPPMGLAHQVKRAIEKGTFSNMLDPGVTDWPVEEAVAFAKLSVSCAELSKKDRPDLASVIVPELNRLRDFGYRLHNNQNCSHSPRPPTPTRGPHSKT 685
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi5081g00006 685 PANTHER OS02G0152300 PROTEIN 14 661 - -
Gabi5081g00006 685 Coils Coil 301 361 - -
Gabi5081g00006 685 CDD STK_N 13 151 - -
Gabi5081g00006 685 MobiDBLite consensus disorder prediction 663 685 - -
Gabi5081g00006 685 Pfam Protein tyrosine and serine/threonine kinase 392 647 IPR001245 GO:0004672|GO:0006468
Gabi5081g00006 685 Gene3D Transferase(Phosphotransferase) domain 1 462 668 - -
Gabi5081g00006 685 SMART serkin_6 389 652 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi5081g00006 685 MobiDBLite consensus disorder prediction 210 257 - -
Gabi5081g00006 685 SUPERFAMILY Protein kinase-like (PK-like) 373 648 IPR011009 -
Gabi5081g00006 685 Gene3D HUPs 9 148 IPR014729 -
Gabi5081g00006 685 Coils Coil 255 275 - -
Gabi5081g00006 685 ProSiteProfiles Protein kinase domain profile. 389 652 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi5081g00006 685 ProSitePatterns Serine/Threonine protein kinases active-site signature. 507 519 IPR008271 GO:0004672|GO:0006468
Gabi5081g00006 685 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 15 141 - -
Gabi5081g00006 685 MobiDBLite consensus disorder prediction 161 257 - -
Gabi5081g00006 685 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 362 461 - -
Gabi5081g00006 685 Gene3D Phosphorylase Kinase; domain 1 358 461 - -
Gabi5081g00006 685 MobiDBLite consensus disorder prediction 182 197 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi5081g00006 Gabi-Chr5081 119629 123163 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi5081g00006 85 659 Receptor kinase-like Gene Family AT5G12000 60.720 0.0 701
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Gabi5081g00006 PK_Tyr_Ser-Thr 2e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi5081g00006 - - gmx:100786386 862.833