Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi5080g00005 ATGGATGGTCTGAGTTGGAATGCCTCACAACTTGTTGCAAACATACCAATCTTGTGGAGCACTCAGCCACAAGAACTTGAAGGAGACTACTCCATGCCCAACCTTAGTTCAAGTGTTCTAAATCAAATGCAAGGGATGCAGAAGGCTCAAACAGTTGCTGGAACCAGTTGGGAAGAAGCTTTAGCATCTCAATCATGCCCGTCCCTTTCAGTCAATATCAACACAACTAGCAATTATGTGCCAGATTTCAACATGGCCCACCAGCAGCAACTTATCAACAGCACCCAAAATGGAAAGTCTACTTGCTCTCTTGAGTCACTTGATTGCTTGTTTTCAGCTACAACTAATAGTAACACAGAACCTTCTGTGGAAGATGATGGGATTTCCATGATTTTATCTGACTGCAGAAACTTATGGAACTTCAGTTATGGCAGTGCAGTTTCATCTGGTGAATCTGAGAGTAATGCTTCCAATGCTAGAAACCAAGACATGCAGTATCCTGTCACTGAACTCGATGAAACGGTATCTCAAAGTTCCTCGGATCAATATGTCATGAGTCAAGGGAAAACAATACATTCTAAGGTAAATTGCTCAAAAAGAAGTTATGATGATCAATATGAGTTTATCAAAGTTGCTGCCAATGATCCCTACTTCAGTATTGTCCAGAATTCTTCTGCTACTGAAAGTGGTTTCAAGCTTATCTCTGAGAATCAACCAAAGAAACCCAGATGGGATAAGCGTCCTGGTTCATCAAATATCAATTTCCAGCAGCCAAATTCATCTGTGTCAACTTCCATCATTGAAGAACCTGATCCAGAGGCTATAGCACAAATGAAGGAAATGATATATAGAGCTGCAGCTTTTAGGCCAGTGAACTTGGCCTTGGAAGTAGTGGAAAAGCCTAAAAGGAAGAATGTGAGGATATCAACTGATCCACAAACTGTGGCTGCAAGGCAAAGAAGGGAGAAAATAAGTGAGAGGATTAGGGTTTTGCAGAAGATTGTGCCTGGTGGAAGCAAGATGGACACTGCATCAATGCTTGATGAAGCTGCAAACTACCTCAAGTTCCTCAGATCACAAGTGAAAGCACTAGAAAATCAAGGGAACAAACTTGACACAATGAATTGTCCTCCTACTAGCTTTGCCTTCTCTTTCAACCCTTCTTTTCCCATGCAAACCTATTTCTCCATCCAAAACCCTAGTGGCCATATCCAACATTCCCAGGGTTGA 1230 0.4179 MDGLSWNASQLVANIPILWSTQPQELEGDYSMPNLSSSVLNQMQGMQKAQTVAGTSWEEALASQSCPSLSVNINTTSNYVPDFNMAHQQQLINSTQNGKSTCSLESLDCLFSATTNSNTEPSVEDDGISMILSDCRNLWNFSYGSAVSSGESESNASNARNQDMQYPVTELDETVSQSSSDQYVMSQGKTIHSKVNCSKRSYDDQYEFIKVAANDPYFSIVQNSSATESGFKLISENQPKKPRWDKRPGSSNINFQQPNSSVSTSIIEEPDPEAIAQMKEMIYRAAAFRPVNLALEVVEKPKRKNVRISTDPQTVAARQRREKISERIRVLQKIVPGGSKMDTASMLDEAANYLKFLRSQVKALENQGNKLDTMNCPPTSFAFSFNPSFPMQTYFSIQNPSGHIQHSQG 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi5080g00005 409 SMART finulus 314 363 IPR011598 GO:0046983
Gabi5080g00005 409 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 313 374 IPR036638 GO:0046983
Gabi5080g00005 409 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 115 405 IPR045843 GO:0003700|GO:0006355
Gabi5080g00005 409 Gene3D - 313 376 IPR036638 GO:0046983
Gabi5080g00005 409 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 308 357 IPR011598 GO:0046983
Gabi5080g00005 409 MobiDBLite consensus disorder prediction 237 264 - -
Gabi5080g00005 409 Pfam Helix-loop-helix DNA-binding domain 318 357 IPR011598 GO:0046983
Gabi5080g00005 409 Coils Coil 347 374 - -
Gabi5080g00005 409 MobiDBLite consensus disorder prediction 249 264 - -
Gabi5080g00005 409 CDD bHLH_AtIND_like 309 367 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi5080g00005 Gabi-Chr5080 90170 91531 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi5080g00005 32 400 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G21330 46.292 1.39e-88 271
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gabi5080g00005 HLH 1.3e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi5080g00005 - - gmx:100793830 550.051