Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi5080g00004 ATGGCATTAGGACACTTACTATTTTTCGTGTTTCAACTTTCTTTGACACTTCTTATCATTGTTCATGCCCAGAATCAATCAGGTTCGGTTGTCTCATCTCGTTATTCTGAATACTAGGATTGCTTCTTGTCATGAGAACTTATGCTTACACCTTTTCTAGGCTTCATTAGTATTGACTGTGGACTTGTGGATGAACAAAGCTACACAGATGAAACCACTGCCATCAATTACACTTCGGATGTCAACTTCACAGGCAATGGTGAAAGCCACACCATATCACCTAAATATAAGGCTTCCCTTGATAGGCAGTTCTGGAATGTTAGAAGCTTCCCGGGAGGAACCAGGAACTGCTATACCCTTCTTGTTCCTCAAGGAAGTAGCAAGAAATATTTAGTCAGGGCCAGTTTCATGTATGGAAATTATGATGGCAAAGACTTTCTTCCCCAATTTGATATCTATCTTGGAGCCAAATGGTGGGAATCAGTGGTGTTTGAGGATGCATCCAGTGTAATAACCAAGGAAATCATTTATGCTGCTTCATCAGATTATGTTCATGTTTGCCTATTTAACACCAACAAGGGTACACCTTTTATTTCAGTTTTAGAGCTTAGAGTTCTTAACAGTGATGCCTATCTAGTTAACTCTCTCGAGCTATTGGCGCGGTTTGATGTAGGCTTAAGGAATGGTGAAATGATCAGATATCCAGATGATGTCTATGATAGGATGTGGACACCTTATAACTCAAATGACTGGAAACAGATAGATACCACATTCACCATAGACAAAGGAGCACCTTCATACAATTTTTTACCATTACCACCCTCCATTGCCATGAGAACAGCAGCAATTCCTGAAAATGTTGGCGACAACATAAAATTTTACTTCCTTCCCAAGTATAATGCCTCCACATATTATGTGTACTTGTACTTTGCTGAAATCCAGAAGCTCAAGGCTAATCAAATTAGAGAGTTCAACTTTTTTGTAAATGGGGAGGTTATTAATAATGCTCCAGTCAATCCTTTGTACCTGAAGAGCCTGTATTATGCATATGCTGTAAGTGAACCTCGGTTGGAACTTTGGATCAATAAAACTAGTAGATCAACTCTTCCGCCTCTCCTCAATGCCATTGAGATATATATGTCAAAGGACTTCTTACAATCAGAAACATATCAAACAGATGTTGATGCTATCATAAATGTCAAATCAATATATGGGATCAAGAGAAACTGGCAAGGAGATCCTTGTACTCCACTGGCTTACTTGTGGGATGGTCTTAACTGTAGCTATGCTGGATCTGGTTCACCAAGGATCATATACTTGAACTTATCTTCCAGTGGTTTAATTGGAAATATAGCTCCTGGCATATCCAGTCTGAATTGGATAGAATATTTGGATTTATCAAACAACAGTTTGACTGGGGCCGTGCCTGACTTCCTATCTCATTTGCGCTTCTTGAAAGTTCTAAACCTGGAAGGAAATCAACTATCAGGAGCAATTCCAATGCAACTCATTGTGCGTTCAAAGAATGGTTTGCTTGAATCCAATTTTGGTGGAAATCCAAATCTTTGCTCCTCAGGTTCATGCAACGAAGGGAATGGGAATAAGATTGTGGTTCCACTGGTGGCATCACTCGGTGGAGCTTTCATGATGCTAGCTGTCACAGTGATTCCTTTCAGCATATACAAAAGGAGTCAAAGAGTTTCCCCTGGTCTGAGCAAGGTGAGTGCTTATTCCAGAATAAAGGAGGAACTTGAGTCAAATAAACAAGAATTCACCTATACTGAAGTCTTGAGCATAACCAGAAACTTTGAGAGGGTTGTGGGGAAAGGAGGAAGTGGAACAGTCTACCTTGGCTATCTAGATGATACTGAGGTAGCTGTCAAAATGCTCTCTCCCTCAGCTCAAGGATATCAGCAATTTCAGGCTGAGGCCAAACTTCTTGCTATAGTTCATCATAAATGCTTGACTGCTCTTATAGGGTATTGTGATGATGGCACCAACATGGCTCTCATCTATGAGTATATGGCTAATGGAGACTTGGCGAAACATTTATCAGATAAAAACGAAAATATATTGAGTTGGAAACAACGACTTCAAATTGCAGTGGATACTGCAGAAGGATTGGAGTATATGCATCATGGCTGCAATCCACCAATTGTTCACAGAGATGTTAAATCTAAAAACATCTTACTAAATGAAAAATTCCAGGGTAAACTAGCTGATTTTGGTTTGTCAAAGATCTTCCCTAATGAAGGTGACACCCATATGTCCACAGTGATTGCTGGCACCCCAGGATACCTTGATCCAGAGTACAATAGATTAAGCAGGTTGAATGAAAAAAGTGATGTTTTCAGTTTTGGAGTAGTTTTGCTTGAGATAATTACTGGCCGACCTGCCATTACCAAAACTGAAGAGAAAATTCACATAATTCAATGGGTTGGTTCCATGCTGACTGAAAGGGAGGTCAATGATATTGTGGATTCAAGGTTACAGGGGGAATTTGATATTGATTCTGCAAAGAAAGCATCAGATACAGCAATGGCTTGTGTAGCACCCACTTCCATTAAGAGGCCAACCATGAGCCATGTTGTTATGGAACTAAAACAATGTTTGGCAAATAGGATAACTCATTTGTCTGAATCTAACAATCATGAGAGTTCATCGAGCAGCTTAAGCACTGTCTCCTTTGATAGAATTAGCGGCGAGAGCTCTCTAGAACGGTAG 2724 0.3998 MALGHLLFFVFQLSLTLLIIVHAQNQSGSVVSSRYSEYXDCFLSXELMLTPFLGFISIDCGLVDEQSYTDETTAINYTSDVNFTGNGESHTISPKYKASLDRQFWNVRSFPGGTRNCYTLLVPQGSSKKYLVRASFMYGNYDGKDFLPQFDIYLGAKWWESVVFEDASSVITKEIIYAASSDYVHVCLFNTNKGTPFISVLELRVLNSDAYLVNSLELLARFDVGLRNGEMIRYPDDVYDRMWTPYNSNDWKQIDTTFTIDKGAPSYNFLPLPPSIAMRTAAIPENVGDNIKFYFLPKYNASTYYVYLYFAEIQKLKANQIREFNFFVNGEVINNAPVNPLYLKSLYYAYAVSEPRLELWINKTSRSTLPPLLNAIEIYMSKDFLQSETYQTDVDAIINVKSIYGIKRNWQGDPCTPLAYLWDGLNCSYAGSGSPRIIYLNLSSSGLIGNIAPGISSLNWIEYLDLSNNSLTGAVPDFLSHLRFLKVLNLEGNQLSGAIPMQLIVRSKNGLLESNFGGNPNLCSSGSCNEGNGNKIVVPLVASLGGAFMMLAVTVIPFSIYKRSQRVSPGLSKVSAYSRIKEELESNKQEFTYTEVLSITRNFERVVGKGGSGTVYLGYLDDTEVAVKMLSPSAQGYQQFQAEAKLLAIVHHKCLTALIGYCDDGTNMALIYEYMANGDLAKHLSDKNENILSWKQRLQIAVDTAEGLEYMHHGCNPPIVHRDVKSKNILLNEKFQGKLADFGLSKIFPNEGDTHMSTVIAGTPGYLDPEYNRLSRLNEKSDVFSFGVVLLEIITGRPAITKTEEKIHIIQWVGSMLTEREVNDIVDSRLQGEFDIDSAKKASDTAMACVAPTSIKRPTMSHVVMELKQCLANRITHLSESNNHESSSSSLSTVSFDRISGESSLER 907
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi5080g00004 907 SMART serkin_6 601 871 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi5080g00004 907 SUPERFAMILY Protein kinase-like (PK-like) 585 867 IPR011009 -
Gabi5080g00004 907 SUPERFAMILY L domain-like 397 522 - -
Gabi5080g00004 907 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 675 879 - -
Gabi5080g00004 907 Pfam Malectin-like domain 58 380 IPR024788 -
Gabi5080g00004 907 ProSitePatterns Protein kinases ATP-binding region signature. 607 628 IPR017441 GO:0005524
Gabi5080g00004 907 ProSiteProfiles Protein kinase domain profile. 601 871 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi5080g00004 907 PANTHER OS07G0107800 PROTEIN-RELATED 56 877 - -
Gabi5080g00004 907 Gene3D Transferase(Phosphotransferase) domain 1 675 894 - -
Gabi5080g00004 907 FunFam Leucine-rich repeat receptor-like kinase 392 525 - -
Gabi5080g00004 907 Pfam Protein tyrosine and serine/threonine kinase 603 867 IPR001245 GO:0004672|GO:0006468
Gabi5080g00004 907 CDD STKc_IRAK 607 869 - -
Gabi5080g00004 907 Gene3D Phosphorylase Kinase; domain 1 583 674 - -
Gabi5080g00004 907 Gene3D Ribonuclease Inhibitor 395 513 IPR032675 -
Gabi5080g00004 907 ProSitePatterns Serine/Threonine protein kinases active-site signature. 719 731 IPR008271 GO:0004672|GO:0006468
Gabi5080g00004 907 Pfam Leucine rich repeat 439 495 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi5080g00004 Gabi-Chr5080 78797 83340 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi5080g00004 41 872 Receptor kinase-like Gene Family AT2G19210 48.645 0.0 796
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Gabi5080g00004 Malectin_like 1e-99 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi5080g00004 - - psat:127087401 1383.62