Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi5079g00002 ATGTCTCACTTTGGAAGGTCCGGTCCCCCAGACATCTCCGATACCTACTCTCTCCTCGTACTCAACATCACATTCCGTACAACTGCCGACGACCTATTCCCTCTTTTTGACAAGTACGGTAAGGTCGTCGACATCTTCATTCCCAAAGATCGAAGGACTGGTGAATCGAGGGGCTTTGCGTTTGTGCGGTACAAGTATGCTGATGAGGCTCAAAAGGCCGTCGATAGGCTCGACGGAAGAATGGTTGATGGTCGTGAAATAACTGTCCAGTTTGCAAAATATGGGCCTAATGCTGAGAGGATTCACAAAGGAAGGATTATTGAAACATCCCCGAGGTCGAAGGGCAGGTCAAGGAGCCGCAGTCCCAAGAAAAGGCATCGTGATGACTACAGAGACAGGGATCATAGGAGGAGAAGTCGCAGCAGAAGTTATGATAGGTACGAACGTGACAAGTACCGTGGGAGAGACAGAGATTATCGCCGTCGAAGCAGGAGCCGTAGTGCCAGTCCTGGTTACAAGGGTCGTGGAAGGGGACACTATGACGATGAGCGTCATAGTAGAAGCAGGAGCAGATCAGTGGATAGCCGCTCCCCTGCACGACACAGTCCTAGTCCTCGAAGGAGCCTGTCCCCTCAGAGGAGTATTTCCCCTAGAAGGAGTCCTTCCCCTAGGAAAAGTCCCCGGGGTGAAAGTCCCGATAATCGTAGCCGTGATGGACGGTCTCCTACACCACGCAGTGTCTCACCACGTGGTCATCCTGATCCTTCGCGAAGCCCATCCCCCCGAAATTCTAATGGTGATGAATAA 807 0.5192 MSHFGRSGPPDISDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPKDRRTGESRGFAFVRYKYADEAQKAVDRLDGRMVDGREITVQFAKYGPNAERIHKGRIIETSPRSKGRSRSRSPKKRHRDDYRDRDHRRRSRSRSYDRYERDKYRGRDRDYRRRSRSRSASPGYKGRGRGHYDDERHSRSRSRSVDSRSPARHSPSPRRSLSPQRSISPRRSPSPRKSPRGESPDNRSRDGRSPTPRSVSPRGHPDPSRSPSPRNSNGDE 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi5079g00002 268 MobiDBLite consensus disorder prediction 100 268 - -
Gabi5079g00002 268 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 88 IPR000504 GO:0003723
Gabi5079g00002 268 Gene3D - 4 104 IPR012677 -
Gabi5079g00002 268 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 94 IPR000504 GO:0003723
Gabi5079g00002 268 MobiDBLite consensus disorder prediction 223 240 - -
Gabi5079g00002 268 MobiDBLite consensus disorder prediction 125 165 - -
Gabi5079g00002 268 MobiDBLite consensus disorder prediction 100 115 - -
Gabi5079g00002 268 SMART rrm1_1 17 90 IPR000504 GO:0003723
Gabi5079g00002 268 SUPERFAMILY RNA-binding domain, RBD 8 101 IPR035979 GO:0003676
Gabi5079g00002 268 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN RZ1A 14 258 - -
Gabi5079g00002 268 MobiDBLite consensus disorder prediction 197 221 - -
Gabi5079g00002 268 SMART rrm2_1 17 90 IPR003954 GO:0003676
Gabi5079g00002 268 CDD RRM_SRSF2_SRSF8 18 90 - -
Gabi5079g00002 268 FunFam Serine/arginine-rich splicing factor SC35 4 103 - -
Gabi5079g00002 268 MobiDBLite consensus disorder prediction 175 196 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi5079g00002 Gabi-Chr5079 30952 34006 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi5079g00002 13 92 Eukaryotic Initiation Factors Gene Family AT3G11400 35.000 6.69e-10 57.0