Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi5077g00013 TCGGAATTACAACAACCACTTGAGTGGTCAATACGGAAGCGTATTGCACTTGGAGCTGCTAGGGGGCTTGCCTATTTGCACGATCATTGTAACCCAAAGATTATTCATCGTGATGTCAAAGCTGCTAATATATTGTTGGATGAGGAATTTGAAGCAGTTGTTGGAGATTTTGGTTTAGCAAAGCTTATGGATTACAAAAAAACTCATGTTACCACTGCTGTATGTGGTACCCTTGGGCATATAGCACCAGAGTACCTCTCAACTGGAAAGTCTTCAGAGAAGACTGACGTTTTTGGATATGGTGTTATGCTTCTTGAACTAATAACTGGAAAGAGGGCTTTTGATCTAGCACGACTTGCCGAAAATGATGATATCATGTTGCTTGATTGGGTTAAAGGACTTCTGATAGACAAGAGATTGGAGACACTGGTGGATGCAGATTTACAGGGAAATTATGATGAGGAGGAGGTAGAACAGTTAATCCAAGTGGCATTGCTATGCACACAAGGCTCCCCTTTGGAAAGGCCCAAGATGTCTGAGGTGGTGAGAATGCTAGAGGGTGAAGGTTTGGCAGAAATATGGGATCAATGGCAGAAAGAGGAGATTATCCGCAAAAATCTCAATCACACTCATCCGTATCACCACCACATTGGTAATTTGATATTAGAGTCAACTTCAAATATGTCACCAGATGAACTATCAGGTCCTAGATGA 714 0.4188 SELQQPLEWSIRKRIALGAARGLAYLHDHCNPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKKTHVTTAVCGTLGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGKRAFDLARLAENDDIMLLDWVKGLLIDKRLETLVDADLQGNYDEEEVEQLIQVALLCTQGSPLERPKMSEVVRMLEGEGLAEIWDQWQKEEIIRKNLNHTHPYHHHIGNLILESTSNMSPDELSGPR 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi5077g00013 237 FunFam Somatic embryogenesis receptor-like kinase 1 1 205 - -
Gabi5077g00013 237 SUPERFAMILY Protein kinase-like (PK-like) 5 186 IPR011009 -
Gabi5077g00013 237 Gene3D Transferase(Phosphotransferase) domain 1 1 205 - -
Gabi5077g00013 237 ProSiteProfiles Protein kinase domain profile. 1 190 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi5077g00013 237 Pfam Protein kinase domain 12 182 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi5077g00013 237 ProSitePatterns Serine/Threonine protein kinases active-site signature. 34 46 IPR008271 GO:0004672|GO:0006468
Gabi5077g00013 237 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 9 195 - -
Gabi5077g00013 237 SMART serkin_6 3 185 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi5077g00013 Gabi-Chr5077 131120 135099 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi5077g00013 2 237 Receptor kinase-like Gene Family AT4G33430 78.151 5.17e-129 377
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Gabi5077g00013 Pkinase 1.1e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi5077g00013 K13416 - mof:131164254 395.586