Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi5077g00012 ATGTTTTTGCATGAGGGATTAAAGTTGAAGTGCACGTGCATGACTATGAATCTATCTCATTCTCATGGAATTTTGTTGAAGAGGAACGGAAACATGGAGCGAGTGATGTCATCTTTCATGGGTTCGTTTCTTCTTTGGTCACTCTTGTTGCTTCATTTGGTGCTTAAGGTTTCTGGCAATCCAGAAGTTGATGCCCTGATTGCATTGAAGAACAGTTTGCTTGATCCGAACGGGGTTCTTGAAAGCTGGAATGCTACCCTTCCCAATCCATGCACATGGTTTCATGTTAAATGCAACGACTATAATCGCGTGACCCGTGTTGATCTTGGAAATGCAAACCTTTCGGGACAACTGGTTCCACAGCTTGGTCAGCTCCCAAATATGCGACACTTGGAACTTTACAGTAATAACATAACTGGGAAAATCCCAAACGAGCTTGGAAATTTGGCAAACTTGGTGAGCTTGGATCTTTACCTGAACAAGTTAACCGGTCCCATTCCGGACACATTGGCTAACCTTAAACAACTACGTTTCCTGCGTCTCAACAATAACAGCTTGTCTGGAAACATTCCTATGTCTTTGACCAATGTTACTACCCTGCAAATCCTTGATTTAGCAAACAACAACTTATCAGGAGATGTACCAGTCAATGGCTCATTTTCAATGTTTACTTCCGACAGTTTTAACAATAATCCTCTCTTGAAGAACAAATCCCTTCTAGCTCCACCACAACAAACTATGTCAGGTAGTAGTGCCACTGGGACTATTGCTGGAGGAGTTGCGGTGGGTGCTGTTCTGTTGTTTCCAGCCCTTGCAATTGCACTTGTTTATTGGCTTAGAAGAAAGCCAAAGGATTATTTCATTGATGTTCCCGTTGAGGAGGATCCTGAAGTTCACCTTGGTCAGCTTAAAAAGTTTTCACTGCGTGAACTGCAATTTGCAACAGATAATTTTAATAACAAAAACATTCTAGGCAGTGGTGGATTTGGCAAAGTTTATAAAGCACGCTTGGCAGATGGTACTCTTGTAGCAGTAAAAAGACTTAAAGAGATACACACCCAAAGTGGGGAGCTACAATTCCAAACTGAAGTGAAAATGATCAGCATGGCTGTGCATCGAAATTTGCTTCGGCTGCGTGGTTTCTGCATGACACCTACTGAGCGGTTGCTTGTATTTCCCTTCATGGTTAATGGAAGTGTAGCATCTTGTTTACGAGATCGTCCGCAATCACAACCACCACTTGAGTGGTCAATACGGAAGCGTATTGCCCTAGGAGCTGCTAGGGGGCTTGCGTATTTGCACGATCATTGTAAACCAAAGATTATTCATCGTGATGTCAAAGCTGCTAATATATTGTTGGATGAGGAATTTGAAGCAGTTGTTGGAGATTTTGGTATAGCAAAGCTTATGGATTACACAGATACTCATGTTACCACTGCTGTACTTGGTACCATTGGGCATATAGCACCAGAGTACCTCTCAACTGGAAAGCCTTCAGAGAAGACTGACGTTTATGGATATGGTGTTACGCTTCTTGAAATAATAACTGGACAGAGGGCTTTTGATCTAGCACGACTTGCCAATGATGATGATTTCATGTTGCTTGATTGGGTTAAAGGACTTCTGATAGACAAGAGATTGGAGACTGTGGTGGATCCAGATTTAAAGGGAAATTATGATGAGGAAGAGGTAGAACAGCTAATCCAAGTGGCATTGCTATGCACACAAGGCTCCCCTTTGGAAAGGCCCAAGATGTCTGAGGTGGTGAGAATGTTAGAGGGTGATGGTTTGGCAGAAAAATGGGATCAATGGCAGAAAGAGGAGATCATCCGCATGGCATTAAAACGGAATCAACGGCTGGAAGAGGAGATCATCCGCAAGTATTTCTACCAATATCCGTATCACCACGCTGGTAATTTGATATTAGACTCAACTTCAAGTATGTCACCAGAAAAACTACCAGGTCCTAGATGA 1974 0.426 MFLHEGLKLKCTCMTMNLSHSHGILLKRNGNMERVMSSFMGSFLLWSLLLLHLVLKVSGNPEVDALIALKNSLLDPNGVLESWNATLPNPCTWFHVKCNDYNRVTRVDLGNANLSGQLVPQLGQLPNMRHLELYSNNITGKIPNELGNLANLVSLDLYLNKLTGPIPDTLANLKQLRFLRLNNNSLSGNIPMSLTNVTTLQILDLANNNLSGDVPVNGSFSMFTSDSFNNNPLLKNKSLLAPPQQTMSGSSATGTIAGGVAVGAVLLFPALAIALVYWLRRKPKDYFIDVPVEEDPEVHLGQLKKFSLRELQFATDNFNNKNILGSGGFGKVYKARLADGTLVAVKRLKEIHTQSGELQFQTEVKMISMAVHRNLLRLRGFCMTPTERLLVFPFMVNGSVASCLRDRPQSQPPLEWSIRKRIALGAARGLAYLHDHCKPKIIHRDVKAANILLDEEFEAVVGDFGIAKLMDYTDTHVTTAVLGTIGHIAPEYLSTGKPSEKTDVYGYGVTLLEIITGQRAFDLARLANDDDFMLLDWVKGLLIDKRLETVVDPDLKGNYDEEEVEQLIQVALLCTQGSPLERPKMSEVVRMLEGDGLAEKWDQWQKEEIIRMALKRNQRLEEEIIRKYFYQYPYHHAGNLILDSTSSMSPEKLPGPR 657
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi5077g00012 657 SUPERFAMILY Protein kinase-like (PK-like) 299 593 IPR011009 -
Gabi5077g00012 657 FunFam Somatic embryogenesis receptor kinase 1 287 394 - -
Gabi5077g00012 657 Pfam Protein kinase domain 319 589 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi5077g00012 657 ProSitePatterns Serine/Threonine protein kinases active-site signature. 441 453 IPR008271 GO:0004672|GO:0006468
Gabi5077g00012 657 Gene3D Ribonuclease Inhibitor 59 241 IPR032675 -
Gabi5077g00012 657 Gene3D Transferase(Phosphotransferase) domain 1 395 612 - -
Gabi5077g00012 657 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 43 602 - -
Gabi5077g00012 657 ProSiteProfiles Protein kinase domain profile. 318 597 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi5077g00012 657 ProSitePatterns Protein kinases ATP-binding region signature. 324 346 IPR017441 GO:0005524
Gabi5077g00012 657 SUPERFAMILY L domain-like 61 229 - -
Gabi5077g00012 657 FunFam Somatic embryogenesis receptor-like kinase 1 395 612 - -
Gabi5077g00012 657 SMART serkin_6 318 592 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi5077g00012 657 FunFam Somatic embryogenesis receptor kinase 1 58 247 - -
Gabi5077g00012 657 Pfam Leucine rich repeat N-terminal domain 60 99 IPR013210 -
Gabi5077g00012 657 Gene3D Phosphorylase Kinase; domain 1 287 394 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi5077g00012 Gabi-Chr5077 119385 126155 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi5077g00012 32 657 Receptor kinase-like Gene Family AT4G33430 67.254 0.0 866
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Gabi5077g00012 Pkinase 5.3e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi5077g00012 K13416 - qsa:O6P43_012307 875.93