Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi5077g00011 ATGCGACACTTGGAACTTTACAGTAATAACATAACTGGGAAAATCCCAAACGAGCTTGGAAATTTGGCAAACTTGGTGAGCTTGGATCTTTACCTGAACAAGTTAACCGGTCCCATTCCGGACACATTGGCTAACCTTAAACAACTACGTTTCCTGCGTCTCAACAATAACAGCTTGTCTGGAAACATTCCTATGTCTTTGACCAATGTTACTACCCTGCAAATCCTTGATTTAGCAAACAACAACTTATCAGGAGATGTACCAGTCAATGGCTCATTTTCAATGTTTACTTCCGACAGTTTTAACAATAATCCTCTCTTGAAGAACAAATCCCTTCTAGCTCCACCACAACAAACTATGTCAGGTAGTAGTGCCACTGGGACTATTGCTGGAGGAGTTGCGGTGGGTGCTGTTCTGTTGTTTCCAGCCCTTGCAATTGCACTTGTTTATTGGCTTAGAAGAAAGCCAAAGGATTATTTCATTGATGTTCCCGTTGAGGAGGATCCTGAAGTTCACCTTGGTCAGCTTAAAAAGTTTTCACTGCGTGAACTGCAATTTGCAACAGATAATTTTAATAACAAAAACATTCTAGGCAGTGGTGGATTTGGCAAAGTTTATAAAGCACGCTTGGCAGATGGTACTCTTGTAGCAGTAAAAAGACTTAAAGAGATACACACCCAAAGTGGGGAGCTACAATTCCAAACTGAAGTGAAAATGATCAGCATGGCTGTGCATCGAAATTTGCTTCGGCTGCGTGGTTTCTGCATGACACCTACTGAGCGGTTGCTTGTATTTCCCTTCATGGTTAATGGAAGTGTAGCATCTTGTTTACGAGATCGTCCGCAATCACAACCACCACTTGAGTGGTCAATACGGAAGCGTATTGCCCTAGGAGCTGCTAGGGGGCTTGCGTATTTGCACGATCATTGTAAACCAAAGATTATTCATCGTGATGTCAAAGCTGCTAATATATTGTTGGATGAGGAATTTGAAGCAGTTGTTGGAGATTTTGGTATAGCAAAGCTTATGGATTACACAGATACTCATGTTACCACTGCTGTACTTGGTACCATTGGGCATATAGCACCAGAGTACCTCTCAACTGGAAAGCCTTCAGAGAAGACTGACGTTTATGGATATGGTGTTACGCTTCTTGAAATAATAACTGGACAGAGGGCTTTTGATCTAGCACGACTTGCCAATGATGATGATTTCATGTTGCTTGATTGGGTTAAAGGACTTCTGATAGACAAGAGATTGGAGACTGTGGTGGATCCAGATTTAAAGGGAAATTATGATGAGGAAGAGGTAGAACAGCTAATCCAAGTGGCATTGCTATGCACACAAGGCTCCCCTTTGGAAAGGCCCAAGATGTCTGAGGTGGTGAGAATGTTAGAGGGTGATGGTTTGGCAGAAAAATGGGATCAATGGCAGAAAGAGGAGATCATCCGCATGGCATTAAAACGGAATCAACGGCTGGAAGAGGAGATCATCCGCAAGTATTTCTACCAATATCCGTATCACCACGCTGGTAATTTGATATTAGACTCAACTTCAAGTATGTCACCAGAAAAACTACCAGGTCCTAGATGA 1593 0.4237 MRHLELYSNNITGKIPNELGNLANLVSLDLYLNKLTGPIPDTLANLKQLRFLRLNNNSLSGNIPMSLTNVTTLQILDLANNNLSGDVPVNGSFSMFTSDSFNNNPLLKNKSLLAPPQQTMSGSSATGTIAGGVAVGAVLLFPALAIALVYWLRRKPKDYFIDVPVEEDPEVHLGQLKKFSLRELQFATDNFNNKNILGSGGFGKVYKARLADGTLVAVKRLKEIHTQSGELQFQTEVKMISMAVHRNLLRLRGFCMTPTERLLVFPFMVNGSVASCLRDRPQSQPPLEWSIRKRIALGAARGLAYLHDHCKPKIIHRDVKAANILLDEEFEAVVGDFGIAKLMDYTDTHVTTAVLGTIGHIAPEYLSTGKPSEKTDVYGYGVTLLEIITGQRAFDLARLANDDDFMLLDWVKGLLIDKRLETVVDPDLKGNYDEEEVEQLIQVALLCTQGSPLERPKMSEVVRMLEGDGLAEKWDQWQKEEIIRMALKRNQRLEEEIIRKYFYQYPYHHAGNLILDSTSSMSPEKLPGPR 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi5077g00011 530 SMART serkin_6 191 465 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi5077g00011 530 ProSitePatterns Protein kinases ATP-binding region signature. 197 219 IPR017441 GO:0005524
Gabi5077g00011 530 Gene3D Ribonuclease Inhibitor 1 121 IPR032675 -
Gabi5077g00011 530 ProSiteProfiles Protein kinase domain profile. 191 470 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi5077g00011 530 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 1 114 - -
Gabi5077g00011 530 FunFam Somatic embryogenesis receptor kinase 1 160 267 - -
Gabi5077g00011 530 SUPERFAMILY Protein kinase-like (PK-like) 172 466 IPR011009 -
Gabi5077g00011 530 ProSitePatterns Serine/Threonine protein kinases active-site signature. 314 326 IPR008271 GO:0004672|GO:0006468
Gabi5077g00011 530 FunFam Somatic embryogenesis receptor-like kinase 1 268 485 - -
Gabi5077g00011 530 Gene3D Phosphorylase Kinase; domain 1 160 267 - -
Gabi5077g00011 530 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 2 475 - -
Gabi5077g00011 530 SUPERFAMILY L domain-like 2 104 - -
Gabi5077g00011 530 Gene3D Transferase(Phosphotransferase) domain 1 268 485 - -
Gabi5077g00011 530 Pfam Protein kinase domain 192 462 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi5077g00011 Gabi-Chr5077 119385 126155 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi5077g00011 1 530 Receptor kinase-like Gene Family AT4G33430 66.838 0.0 741
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Gabi5077g00011 Pkinase 3.2e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi5077g00011 K13416 - qsa:O6P43_012307 759.985