Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi5077g00009 ATGGCTGTTTTATCCTTAAGTTCAAGCCTAAGCATTTCCAAGCCATTTCAATGCGTTCCACTCTCAACTAAACAGCAAAGAACTTCACATATGCAGTTTTCTGTTTCATGCAGAGCCACAAAGACCACACATGGAAACTTCTACAAGATGTTGTCTCTGAGTCCCGGAAGTGCCACAATGGATGAGATAAAGAGAGCTTATAGATCAATGGCTCTTCAGTACCATCCAGATGTGTGCCATGATCCTTCTATGAAAGAGGAGTCAACGAGGATGTTTGTTCAGTTGAATGCAGCTTATAAGACTTTGACCAATCCTATGCTTCGAGCAAAGTATGACTCTGAATTGGGGTTGAGAAACAAAATGTGTGTTAGTGAAGAGATATGGAGAAATAGGTGGCAGGAGCAAGTGGTTGAGTTGAAGAAAAGGTCTTGTAGACGTATGGGACAGAAAGGGGGATCATGGGGCACCAGAATGAGGACACAAAGCATGAAACACAGGAACTAA 504 0.4246 MAVLSLSSSLSISKPFQCVPLSTKQQRTSHMQFSVSCRATKTTHGNFYKMLSLSPGSATMDEIKRAYRSMALQYHPDVCHDPSMKEESTRMFVQLNAAYKTLTNPMLRAKYDSELGLRNKMCVSEEIWRNRWQEQVVELKKRSCRRMGQKGGSWGTRMRTQSMKHRN 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi5077g00009 167 FunFam Chaperone protein dnaJ 20, chloroplastic 33 137 - -
Gabi5077g00009 167 Pfam DnaJ domain 46 112 IPR001623 -
Gabi5077g00009 167 MobiDBLite consensus disorder prediction 148 167 - -
Gabi5077g00009 167 Gene3D DnaJ domain 33 139 IPR036869 -
Gabi5077g00009 167 ProSiteProfiles dnaJ domain profile. 46 115 IPR001623 -
Gabi5077g00009 167 SUPERFAMILY Chaperone J-domain 14 111 IPR036869 -
Gabi5077g00009 167 CDD DnaJ 46 104 IPR001623 -
Gabi5077g00009 167 PRINTS DnaJ domain signature 67 82 IPR001623 -
Gabi5077g00009 167 PRINTS DnaJ domain signature 87 107 IPR001623 -
Gabi5077g00009 167 PRINTS DnaJ domain signature 49 67 IPR001623 -
Gabi5077g00009 167 PANTHER CHAPERONE PROTEIN DNAJ 20 CHLOROPLASTIC 23 165 - -
Gabi5077g00009 167 SMART dnaj_3 45 107 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi5077g00009 Gabi-Chr5077 95439 95957 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi5077g00009 36 113 C2H2 Transcription Factor Family AT1G74250 41.250 9.16e-08 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi5077g00009 - - gmx:100811478 216.853