Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi5074g00005 ATGAAGATAATGACTAGATCCTCTCAATTTCTCTTCCTTTCACTCCTTGCTATTTGGTTCACATCGCTTGCTTTTGGAGCCACTACTCATCCTGACGAAGTGCAAGCTCTGAAAGATATAGCTAACACACTTGGTAAGAAGGATTGGGACTTCAACAACGCAGATCCATGCAGCGGACAACGGAACTGGATTACTCCCTCGGTGAACACTGCAGTACAGAACAATGTCACCTGCAATTGCAGTATACCCGGTGAAAACTTTTGCCGTGTTATTATAATATTGCTGAAATCTGAAAATCTTCAAGGGAAGCTTCCCCCAGAACTGATAAGGTTGCCTTACCTCGAAGAAATTGACCTCACTCGCAACTATCTTAACGGTACAATTCCTAAAGAATGGGGATCCTCCAATCTTCGCAAAATTTCTCTTTATGGAAATAGACTAACTGGTCAAATTCCAAAAGAGATAGGAAATATCACTACACTGGAAAGTTTGGTCCTTGAGTTCAATCAATTCTCTGGAAATCTTCCTCCAGAACTGGGAAACCTTTCTCACATTCAAAGACTGCATCTTACCTCCAACAACTTTACTGGAGAGATACCAGAAACTTTTGCAAGACTTACAACATTGACAGAACTCCGACTTGGTGACAATCAATTCTCTGGAAAGATACCTGATTTTATTCAAAAATGGACAAATCTCAATATACTAGCAATTCAAGGGAGTGGTTTTAGTGGACCAATTCCTTCTGGTGTTTCATTTCTGCAAAACTTAACCGACTTGAGAATTAGTGATTTGAATGGACCTGATTCTACTTTTCCTCGAGTTGATAACATGACAAAATTGAATGTATTGATATTAAGGAGTTGCCTTATTAATGACACACTACCTCAGTATCTTCAAAACAAGACAAACTTCAACGAACTTCAAGTCTTAGACTTGAGCTATAACAAATTAAGTGGAAACATTTCAGAGAACTTTGAACAGCTATTAGGAGTGACTTACTTATATTTAACAGGAAATTTACTAACTGGACCAGTGCCCAAGTGGATAGAGAAAGCTAAAAAAAACATAGATCTTTCATATAACAACTTCAGCAATGAAAACCCCCAGCAATTGACATGCCAGGCGACAGAAACAAAAGTGAACTTGTTTGCAAGCTTTCCAACGGGGAATAAGGGACCCATTTATTGTCCGAGGGCAAGCAACGGTTGTTCTAAAACATTTAACTCTCTCCATATAAACTGTGGTGGAAGTGAGATAAACAGTGAAGGCATAACATATGATGATGATTTAGATCCAGCAGGACCAGCAACATCTAAAGAGCACGGACAAAACTGGGCATTTAGCAACACTGGTCATTTCTTGGATAGTAATAGCACTATAGTACAGTCCTATATCCAACAAAATAAAACTAGGCTTTTGATGACTGATTCTGATCTGTATAAGACCGCACGTGTTTCCCCCATTTCCCTGACTTATTATGGATTTTGCCTGGAAAATGGAGACTACACTGTAAAGCTCCACTTTGCGGAGATAATGTTCACTGATGATAACACATATAGCAGCTTAGGGAGGCGTATATTTGATGTCTACATACAGGGAGAGCTGGTACTGAAGGATTTCAACATTGCAAATAAAGCACAAGGAGTTGGAAAGGAAATAATATTACCATTTCCTGCTTATGTGGGTAATAATGCTTTAGAGATCCGATTCTATTGGGCTGGGAAGGGGACAACTGCTATCCCATATAAATCAGTATATGGACCTCTTATATCAGCTATATCTGTCAGTCCAGACTCTACAGGTAGTAGCATATCTGCAGGGGCTGTGGTTGGAATAGTGGCTGCAGCAGTTTTTGTTGTCATCCTAATTGTACTGTGGTGGAGAGGTTGTATAGGAAAAAAAAAATCATTAGCGAAAGAGCTAAAGGATTTAGATCTACAAACTGGTTTATTTACCTTAAGGCAAATCAAAGCAGCAACAAATAACTTTGACATTTCCAATAAGATTGGGGAAGGAGGCTTTGGTCCTGTTTATAAGGGCACTTTGCCGGATGGCACAATAATAGCAGTCAAGCAACTTTCAGCAAAATCGAAACAAGGAAACCGTGAGTTTGTAAATGAGATAGGCATGATCTCAGCTTTGCAACACCCTTGTCTTGTTAAACTTTATGGCTGTTGTGTTGAGGGAGATCAGTTGTTGCTGGTATATGAGTATATGGAAAACAATAGCCTTGCACGGGCTTTATTTGGCCGTGAAGAATCCCGTTTAAAATTGAATTGGCCAACAAGACACAAGATTTGCGTTGGTATTGCTAGAGGCTTAGCTTTCCTGCATGAAGAATCAAGATTGAAAATTGTTCACAGGGACATTAAGGCCACTAATGTGTTGCTAGACAAAGACTTGAACCCAAAGATATCTGATTTTGGTTTGGCCAAGCTTGATGAGGAGGACAATACTCACATAAGCACCCGAATAGCTGGGACCTATGGATATATGGCTCCTGAATATGCAATGCACGGTTATTTGACTGACAAAGCTGATGTCTATAGTTTTGGAATTGTTGCATTGGAAATTGTTAGTGGAAAGAATAACACCATGCACCGGTCAAAGGAAGGAGCATTGTATATTCTTGATTGGGCACATCTGTTGAAAGAGAAAGGTAACCTAATGGAACTAGTTGATAAAAGGTTAGGTTCAGATATCAATGTAGAGGAGGCAATGGTGATGATCAAATTGGCTCTCCTATGCACCAATTCCACTTCAAACCTTAGGCCAACCATGTCTTCAGTTCTAAGCATGCTTGAAGGCAGAACAGTGGTTCCAGAATTTGTTTCAGATTCAAGTGAGGTAATGGATGAAATGAAGTTGGAGGCAATGAGACAGTATTACTATGAGATAGAAGAAAATAAGTTTAGTGAGACACAAACAGGAAGTCAGAATTTATCAATTGATGATGGACCATGGACTGCTTCATCTTCATCAGCTGTCGACCTCTACCCTGTCCACATTGATTCTTCTTATTGGGAGAAAAGAAAATGA 3042 0.3951 MKIMTRSSQFLFLSLLAIWFTSLAFGATTHPDEVQALKDIANTLGKKDWDFNNADPCSGQRNWITPSVNTAVQNNVTCNCSIPGENFCRVIIILLKSENLQGKLPPELIRLPYLEEIDLTRNYLNGTIPKEWGSSNLRKISLYGNRLTGQIPKEIGNITTLESLVLEFNQFSGNLPPELGNLSHIQRLHLTSNNFTGEIPETFARLTTLTELRLGDNQFSGKIPDFIQKWTNLNILAIQGSGFSGPIPSGVSFLQNLTDLRISDLNGPDSTFPRVDNMTKLNVLILRSCLINDTLPQYLQNKTNFNELQVLDLSYNKLSGNISENFEQLLGVTYLYLTGNLLTGPVPKWIEKAKKNIDLSYNNFSNENPQQLTCQATETKVNLFASFPTGNKGPIYCPRASNGCSKTFNSLHINCGGSEINSEGITYDDDLDPAGPATSKEHGQNWAFSNTGHFLDSNSTIVQSYIQQNKTRLLMTDSDLYKTARVSPISLTYYGFCLENGDYTVKLHFAEIMFTDDNTYSSLGRRIFDVYIQGELVLKDFNIANKAQGVGKEIILPFPAYVGNNALEIRFYWAGKGTTAIPYKSVYGPLISAISVSPDSTGSSISAGAVVGIVAAAVFVVILIVLWWRGCIGKKKSLAKELKDLDLQTGLFTLRQIKAATNNFDISNKIGEGGFGPVYKGTLPDGTIIAVKQLSAKSKQGNREFVNEIGMISALQHPCLVKLYGCCVEGDQLLLVYEYMENNSLARALFGREESRLKLNWPTRHKICVGIARGLAFLHEESRLKIVHRDIKATNVLLDKDLNPKISDFGLAKLDEEDNTHISTRIAGTYGYMAPEYAMHGYLTDKADVYSFGIVALEIVSGKNNTMHRSKEGALYILDWAHLLKEKGNLMELVDKRLGSDINVEEAMVMIKLALLCTNSTSNLRPTMSSVLSMLEGRTVVPEFVSDSSEVMDEMKLEAMRQYYYEIEENKFSETQTGSQNLSIDDGPWTASSSSAVDLYPVHIDSSYWEKRK 1013
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi5074g00005 1013 Gene3D Ribonuclease Inhibitor 31 189 IPR032675 -
Gabi5074g00005 1013 Pfam Malectin domain 410 594 IPR021720 -
Gabi5074g00005 1013 SUPERFAMILY Protein kinase-like (PK-like) 647 949 IPR011009 -
Gabi5074g00005 1013 SUPERFAMILY L domain-like 67 372 - -
Gabi5074g00005 1013 Pfam Protein tyrosine and serine/threonine kinase 666 934 IPR001245 GO:0004672|GO:0006468
Gabi5074g00005 1013 SMART serkin_6 664 935 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi5074g00005 1013 ProSiteProfiles Protein kinase domain profile. 664 945 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi5074g00005 1013 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 408 599 - -
Gabi5074g00005 1013 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 18 968 - -
Gabi5074g00005 1013 Gene3D Ribonuclease Inhibitor 255 391 IPR032675 -
Gabi5074g00005 1013 Gene3D Ribonuclease Inhibitor 190 254 IPR032675 -
Gabi5074g00005 1013 Gene3D Transferase(Phosphotransferase) domain 1 740 948 - -
Gabi5074g00005 1013 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g53420 30 266 - -
Gabi5074g00005 1013 Gene3D - 409 600 - -
Gabi5074g00005 1013 ProSitePatterns Serine/Threonine protein kinases active-site signature. 786 798 IPR008271 GO:0004672|GO:0006468
Gabi5074g00005 1013 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 633 739 - -
Gabi5074g00005 1013 FunFam Putative LRR receptor-like serine/threonine-protein kinase 740 947 - -
Gabi5074g00005 1013 CDD STKc_IRAK 670 937 - -
Gabi5074g00005 1013 Gene3D Phosphorylase Kinase; domain 1 632 739 - -
Gabi5074g00005 1013 Pfam Leucine rich repeat 160 219 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi5074g00005 Gabi-Chr5074 81930 91654 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi5074g00005 23 967 Receptor kinase-like Gene Family AT1G53420 55.625 0.0 1000
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gabi5074g00005 PK_Tyr_Ser-Thr 1.9e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi5074g00005 - - gmx:100785451 1502.26