Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi506g00012 ATGGGTCTTTCAAACTATCCTAGTGCAGCTGAAGGTGTATTACCTGTGCTCGTGATGAACACTGTTCTTTCAGTGGCACTTTTAAAGAACATGTTTCGATCGTTGCTCCAAGTAGTTGGTGCCACTCCAACAACTAGTACCTCGTATTCTCCAAATATGGACCAAGAGTCGCACGAGAGTTCACGGGAAAGGAGGGTGTCAATAACCCATTACAAGTCCTTGTGCAACAACACCACAACTACGGTTGAGTGCTGCGTGTGTCTCTCGAGGTTTCAAGCGAATCAAGAGGTGAGCGAGTTGCCTTGCAAGCATTTCTTCCACAAAGGTTGCTTAGACAAATGGTTTGATAACAAACATACCACATGCCCTTTATGTCGTTCCATGGAATAG 390 0.4513 MGLSNYPSAAEGVLPVLVMNTVLSVALLKNMFRSLLQVVGATPTTSTSYSPNMDQESHESSRERRVSITHYKSLCNNTTTTVECCVCLSRFQANQEVSELPCKHFFHKGCLDKWFDNKHTTCPLCRSME 129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi506g00012 129 ProSiteProfiles Zinc finger RING-type profile. 84 126 IPR001841 -
Gabi506g00012 129 MobiDBLite consensus disorder prediction 43 62 - -
Gabi506g00012 129 SUPERFAMILY RING/U-box 83 127 - -
Gabi506g00012 129 SMART ringv_2 83 126 IPR011016 GO:0008270
Gabi506g00012 129 PANTHER - 1 128 IPR044249 -
Gabi506g00012 129 SMART ring_2 84 125 IPR001841 -
Gabi506g00012 129 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 43 129 IPR013083 -
Gabi506g00012 129 Pfam Ring finger domain 83 126 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi506g00012 Gabi-Chr506 136957 137647 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi506g00012 1 127 C3H Transcription Factor Family AT2G04240 36.301 2.69e-26 94.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi506g00012 K16285 - gmx:100811790 181.03