Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi506g00007 ATGGAATGGGCCCACTTGCTCTTCTTCATAGTACTAGTGGTGCCTGTGTTCCATTCGTGTGTGTATGCACAAACAGGCACATCATCAAACCCTCCCTTTGCAATCACCTTAAAGGAGAACTTGAAGGACACATTGAGTGTGATGTCGGTTGCTTTCTTCTCTGCCTTCGTTTTCATGGGTTTTTTTTCACTCTACCTCCGTCATTGCTCCTCCGGATACGGTGCCAATATTCGCAACCCAATCACCGCCGCAGCTGGCCTCTGTCGCGGTGGTTTCAACCGTCAAGTCATCGATAAATGCCCAATCCTTGTGTACTCCACCGTGAAGGACCTTCAAATCGGAAAAGGCTCACTGGAATGCGCTGTGTGCTTGAGCGAGTTTCAAGACTTCGACAACATACGGTTGTTACCAAAATGTTACCACGTATTCCACCCAGATTGCATCGATGCTTGGTTACTCTCTCACATGAATTGCCCTGTTTGTCGCGCAAGGGTCACGTGTGGTGATGTCGGCGACATTGCCATCCCCATACCAATGCTCACTGCTTCCAACAACATCGAAAACAACAACACAACCACGACGCCTGAAATAACGGGTCGTGAAATGGAACAGCAACAAGAGGTGGTGCGTAATAACATGGAAAAAGGACAGAGCAGCACCGTAACGGAGTCAGAGGAAAGTGAACCTGAGCGTGCTCCACGTGAATCGAGAATGTTGGAAAAGTTTAAGAGGTCACATTCGACGGGTCATTCTTTGGTGGAAGCTGAGGAGAACGTTAAGGTGGTGGATAGCGACGTCGTTTTGCCAGGAGCATGGAGTTCCAAGACGACAGCATGTTACACAAGTAACAACGACGTGGAGCGGTGGTCTTTGTCCATGACTCCGCCTTTTCTTTTTAATAATAATAATTTAGGGAATGAAAGGATATGCTGGACGCCACCACTTAGAATGTCGTTTTACAAGGCCCATGGAGCTCAGAAACCGTCGCATCTTCGTTCGGTTTGA 1005 0.4806 MEWAHLLFFIVLVVPVFHSCVYAQTGTSSNPPFAITLKENLKDTLSVMSVAFFSAFVFMGFFSLYLRHCSSGYGANIRNPITAAAGLCRGGFNRQVIDKCPILVYSTVKDLQIGKGSLECAVCLSEFQDFDNIRLLPKCYHVFHPDCIDAWLLSHMNCPVCRARVTCGDVGDIAIPIPMLTASNNIENNNTTTTPEITGREMEQQQEVVRNNMEKGQSSTVTESEESEPERAPRESRMLEKFKRSHSTGHSLVEAEENVKVVDSDVVLPGAWSSKTTACYTSNNDVERWSLSMTPPFLFNNNNLGNERICWTPPLRMSFYKAHGAQKPSHLRSV 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi506g00007 334 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 30 254 - -
Gabi506g00007 334 ProSiteProfiles Zinc finger RING-type profile. 120 162 IPR001841 -
Gabi506g00007 334 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 92 169 IPR013083 -
Gabi506g00007 334 FunFam E3 ubiquitin-protein ligase ATL6 82 167 - -
Gabi506g00007 334 MobiDBLite consensus disorder prediction 224 249 - -
Gabi506g00007 334 SUPERFAMILY RING/U-box 102 166 - -
Gabi506g00007 334 SMART ring_2 120 161 IPR001841 -
Gabi506g00007 334 MobiDBLite consensus disorder prediction 210 249 - -
Gabi506g00007 334 Pfam Ring finger domain 119 162 IPR001841 -
Gabi506g00007 334 CDD RING-H2_EL5-like 119 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi506g00007 Gabi-Chr506 100779 101840 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi506g00007 5 318 Rapid Response to Elicitors AT3G05200 33.239 1.73e-45 157
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi506g00007 K10664 - zju:107425216 177.178