Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi506g00002 ATGAATGCAAACCCTCACCCCAGCGCCACCCGGCGCCGCCCTGTTTTCAACAATCCAACTCCCCACGGCGGATGGAATTCCCACCCCCGTCCCCGTCCCGTCCACCATTCATACACTTACTGGAAGCCCCAATTGCAACCAAACCACTGCCTGGACCGTCCTCCGGAGCCCAATTTCGTCGTGAAGCTCCGTTCCAGCCGCCGTGCCTACCGCCGGGAGGACGTTGAGTCCTTGATCGGCAAATGCAAGTCGGCGCCGGAATATTCCTCTTTTTACCCCAGCGATCGCGTCGCCGCCGTCCTCAATTTCCGGGAGTGGGTGGACGCACGCGACGCCGTCGTTTGGTTCTGGGAATCGCGCCTCTCCGGAGTCCACGATTTCACGCCGGAGCTCACCTGGAACGTTCGCGTCCCTTCCGACAGGGTTGAACTCGAAGGTTGCCTCCGAACCCTATTCGCGAGCCACGTGAAGGGGTTGATGGAAGGCAAGGAGGTGAAGCGTTGGGTAGCAGAAAGCGAGAGATTATCGAAGGAGATTGCACAAGCTGCAAACATGTTGGGTAAAGTTTTGCCAATTGGCGTGCACTGGCAGCAGATGGAGAAGAAGAAAGGGCTTGATGATGAGAAGAAACTGATTGAAAGGAGAATACAAGAGTTTAATTCTGCAATGGAGTGTATATTGCAGTATCTGGAGGAGAATAAGGTGGAGGGTGGTGATGATGTTCTTAGTGTGTTTAGGTTTGATGGAAGTTTGGATTGGAAGAAGATTCACTGCCTGATCATGAGGGAGTGTCGCAGACTTGAGGATGGATTGCCAATTTATGCTTACCGAAGGGATATTCTTCAGGAAATACATTCTCAACAGATAATGGTATTGATTGGAGAGACTGGTTCTGGGAAGAGTACGCAGTTGGTACAGTTTCTTGTTGATGCAGGCATCGGTACTGATGAGTCCATAATATGCACCCAACCTCGCAAGATTGCTGCCAAATCATTGGCTCAAAGGGTCCAGGAAGAAAGCACTGGATGTTATGAAGGCAATTCAATCATGTTTTATCCTACATCTTCATCCCTTTGCGACTCTGATTCTAAGATAAAATTCGTGACAGATCACTGTTTATTGCAGCACTACATGAGTGATAATAATTTGTCTGGGGTCTCGTGCATCATAATTGATGAGGCTCATGAAAGGAGCTTAAATACTGATCTACTGTTGGCATTGATAAAGAATTTACTGTGTAAGAGGGTTGAAATGCGCCTTATCATTATGTCTGCTACAGCTGATGCAAAGCAGCTATCTGAATACTTCTATGGTTGTGGAATTTTTCACGTGCTTGGGAGAAACTTTCCTGTGGATGTTAGATATGTTCCTTCTGACTATGCAGGACAGTCTGGTTCTGCTGTTGTTGCCTCTTATGTTTCTGATGTTGTCAAAATGGCGACTGAGATTGACAAAACTGAGAAAGAGGGAACTATTCTTGCCTTTTTGACCTCGCAGATAGAAGTAGAATGGGCCTGTGAAAAGTTTGTAGCTCCCTCAGCAGTTGCGTTGCCCTTACATGGAAAACTTTCGCCTGAAGAGCAATTTCATGTTTTCCAGAACTACCCGGGAAAAAGAAAAGTGATATTTTCAACAAATCTTGCAGAGACATCACTTACAATACCTGGTGTTAAGTATGTGATAGATTCTGGGTTGGTTAAAGACAGTCGATATGATCCTGGCAGCGGAATGAATGTACTTAAGGTTTGCTGGATCAGCCAGAGCTCTGCTAATCAGCGGGCTGGTCGTGCCGGGAGGACTGAGCCTGGTAGGTGCTACAGACTGTACTCAGAAGCTGATTATCAGTGTATGGAACTAAATCAAGAACCTGAGATTCGAAGAGTTCATCTTGGTGTAGCAGTTTTGAGGATTCTTGCTTTAGGAGTGAAGAATGTGCAGGATTTTGATTTTGTTGATGCTCCAAGTCCTAGCTCTGTTGAGATGGCAATCAAGAATCTAATTCAATTAGGAGTCATTCAGCTGAAAAATAATGTTCATGAATTAACTCATGAAGGTAAGTGCTTAGTAAAAATGGGGATCGAACCTAGGCTTGGTAAACTTATTCTTGGCTGTTTCAATCTTGGTTTGGGTAGAGAAGGCATTGTCCTTGCTGCTGTGATGGCCAATGCTAGTAGCATATTTTGCAGAGTTGGTAATGAAGGTGATAAGCAAAGATCTGACTGTCTTAAAGTGCAATTTTGCCATTCTGATGGTGACCTCTTTACTCTTCTTGCTGTGTACAAGAAATGGGAAGCTTTGCCTCAAGAAAGGAAGAACAAATGGTGTTGGGAGAACAGCATCAATGCCAAATCTATGAGGAGATGCCAAGACACAATTTCAGAGCTAGAATCTTGCCTTGAGCGTGACCTTCCCTTTGTTGTTCCAAGTTACTGGCGTTGGGACCCTTGCATGCCCTCTGCTCATGATAAAAATATGAAAAGGGTTATACTGTCCTCACTTGCTGAGAATGTAGCCATGTACTCTGGATGCAATCATCTTGGTTATGAAGTAGCACAAACTGGGCACCATGTTCAACTACATCCATCTTGTTCATTGCTTGTATTTGCTCAGAAACCTGGTTGGGTGGTTTTCGGTGAGCTGCTTTCAGTTTCTAATCAATATTTGGTCTGTGTAAGTGCTTTTGACTTTCAATCATTGGAAGACCTTTACCCTCCTCCCTTGTTTGATGTGTCCAAGATGGAACAGCGGAAGTTGCAAATCAGGAGATTGACTGGTTTTGGCTGTATGCTTCTGAAGAGATTTTGTGGGAAAGCCAACAGTAATTTGCTTGGTCTTGTATCGCGCATAAGGAAAGCATGTATGGATGACCGTATTTTCATTCAAGTGAGTGTTGATGAGAATGACATCCAGTTATATGCCACTTCACATGATATGAATACAGCCCTTAGTTTGATTAATGATGCTTTAGAATATGAGAAGAAGAGATTATATACTGAATGCATGGAAAAATATTTGTATCATGGATCTGGTTTCTCACCTTCCGTAGCTTTGTTTGGGTCTGGTGCTGAGATAAAGCATTTGGAACTTGACAAACGTTCCTTGAGTGTTGATGTGTTTCACCCAAACATAAATGCAATTGACGACAAGGAACTCTTGATGTTTTTTGAGAAGAATATCTCAGGTTCTATCTGTGCTGTGCACAAGTTCACAGGCATGACAAAGGAGGTTGAAAATAGAGAAAAGTGGGGCAAGATAACATTTCTGTCCCCTGATGCTGCTAAAAGAGCTGCTGAACTAGACGGAGAGGAGTTTTGTGACTCGTCCTTGAAAATTGTTCTGTCACAAACAGCTATGGGAGGAGATAAAACATTTTCATTTCCTGCTGTTACTGCAAAAATTTCTTGGCCTCGTAAATTTAGCATGGGGTTTGCCATAGTTAAATGTGACATAAAAGATGTCAATTTCATCTTGAGAGATTTCTCTAACCTTGCAATAGGAGGAAGGAATGTTCGATGTGAAGCTAGCATAAAGCATGAGGATAGTGTAGTGATAAGAGGGCTTGACAAAGAGCTCTCGGAAGCTGAAATTTTGGATGTACTTAGAATGGCTACAAGTAGAAGAATTCTGGATTTTTTCTTGGTGAGAGGAGACGTTGTTGGAAATCCACCATGCAATGCCTGTGAAGAGGCACTCCTAAAAGAAATTTCCCCCTTAATGCCCAAAAGAAACCCCCACATTAGTTCTTGCCGCGTTCGTGTGTTTCCACCTGGGCCGAAGGATGCTTTTATGAGAGCTCTAATCACTTTTGATGGAAGATTACATTTAGAGGCAGCAAAAGCTTTGGAGCAAATTGAAGGAAAGGTGTTGCCTGGATGTCTTTCATGGCAGAAGATAAAGTGCCAACGGTTGTTCCACAGCACCTTGACATTTCCTATTCATGTGTATCCTGTGATCAAGGAACAACTGGAAAAAGTACTTGCAAGCTTCAGCAAATTAAAGGGTGTTGAGTGGAAGCTGGACAGGACTGCTAATGGTTCCCACCGAGTGAAGATAACAGCCAATGCCACAAAGACAGTGGCAGAAGTTAGGAGACCTCTGGAAGAACTATTGAGAGGCAAAACCATTGACCACGACAGCCTCACCCCCGCAGTTCTACAGCTCATGTTGTCTAGAGATGGCTTGAATCTTAAAAGCTCATTACAGCAAGAGACAGGAACTTACATGTTTTTTGACAGGTACAACCTTGATTTACGTGTGTTTGGTTCCCCGAACAAGATTGCTTTGGCTCAGAAGAAGGTGATTCAATGCCTACTCTCTCTACATGAAGGAAAACAGCTAGAAATCCATCTGAGAGGGAGGGATCTACCTCCTGATTTAATGAAGCAAGTGGTTAAGAATTTTGGGCCAGATCTCCATGGACTAAAAGAGAAGGTACCTGGGGCCGATCTTAAACTCAACACACACCGCCAGATAATCTTTCTTCATGGTAACAAGGAGTTGAAACCAAAAGTAGAGGAAATGATTTTTGAGATTGCACGTTCAAGTCATCATTTGGTTGAGAGACCTGACACCGGACCTAGTTGCCCAATTTGCTTGTGTGAGGTTGAGGATGGATACCAGCTTGAAGCCTGTCGTCATTTGTTCTGCCGGTTATGTCTGGTGGAGCAATGTGAATCTGCTATAAGAAACCAAGGCAGTTTCCCAATATGTTGTGCTCACGGGGGCTGTGGAGATCCCATTGTGCTTACAGATTTGAGATCTCTCTTATCAAATGATAAGTTGGAGGAACTTTTCAGGGCTTCTTTGGGAGCTTTCGTGACATCGAGTGGGGGAATATACAGGTTTTGCCCGTCTCCTGACTGCCCCTCAGTTTATCGAGTTGCAGATCCTGAGACAGGTGGTGAGCCATTTGTTTGTGGTTCATGTTATTCTGAGACTTGTACCAGGTGCCACTTAGAGTATCATCCATTCCTTTCGTGTGAGAGATATCGTGAATTCAAGGAAGATCCGGACTCATCTCTGAAGGAGTGGTGCAAAGGGAAAGAGCAAGTTAAGAGCTGCCCTGGCTGTGGTTATACAATTGAGAAGGTTGATGGTTGCAACCACATTGAGTGCAAGTGTGGAAACCATGTCTGCTGGGTTTGCTTGGAGTTCTTTAAAAGTAGTGAAGAATGTTATAACCATTTGAGAAATATACACATGGCCATTATATAA 5214 0.4407 MNANPHPSATRRRPVFNNPTPHGGWNSHPRPRPVHHSYTYWKPQLQPNHCLDRPPEPNFVVKLRSSRRAYRREDVESLIGKCKSAPEYSSFYPSDRVAAVLNFREWVDARDAVVWFWESRLSGVHDFTPELTWNVRVPSDRVELEGCLRTLFASHVKGLMEGKEVKRWVAESERLSKEIAQAANMLGKVLPIGVHWQQMEKKKGLDDEKKLIERRIQEFNSAMECILQYLEENKVEGGDDVLSVFRFDGSLDWKKIHCLIMRECRRLEDGLPIYAYRRDILQEIHSQQIMVLIGETGSGKSTQLVQFLVDAGIGTDESIICTQPRKIAAKSLAQRVQEESTGCYEGNSIMFYPTSSSLCDSDSKIKFVTDHCLLQHYMSDNNLSGVSCIIIDEAHERSLNTDLLLALIKNLLCKRVEMRLIIMSATADAKQLSEYFYGCGIFHVLGRNFPVDVRYVPSDYAGQSGSAVVASYVSDVVKMATEIDKTEKEGTILAFLTSQIEVEWACEKFVAPSAVALPLHGKLSPEEQFHVFQNYPGKRKVIFSTNLAETSLTIPGVKYVIDSGLVKDSRYDPGSGMNVLKVCWISQSSANQRAGRAGRTEPGRCYRLYSEADYQCMELNQEPEIRRVHLGVAVLRILALGVKNVQDFDFVDAPSPSSVEMAIKNLIQLGVIQLKNNVHELTHEGKCLVKMGIEPRLGKLILGCFNLGLGREGIVLAAVMANASSIFCRVGNEGDKQRSDCLKVQFCHSDGDLFTLLAVYKKWEALPQERKNKWCWENSINAKSMRRCQDTISELESCLERDLPFVVPSYWRWDPCMPSAHDKNMKRVILSSLAENVAMYSGCNHLGYEVAQTGHHVQLHPSCSLLVFAQKPGWVVFGELLSVSNQYLVCVSAFDFQSLEDLYPPPLFDVSKMEQRKLQIRRLTGFGCMLLKRFCGKANSNLLGLVSRIRKACMDDRIFIQVSVDENDIQLYATSHDMNTALSLINDALEYEKKRLYTECMEKYLYHGSGFSPSVALFGSGAEIKHLELDKRSLSVDVFHPNINAIDDKELLMFFEKNISGSICAVHKFTGMTKEVENREKWGKITFLSPDAAKRAAELDGEEFCDSSLKIVLSQTAMGGDKTFSFPAVTAKISWPRKFSMGFAIVKCDIKDVNFILRDFSNLAIGGRNVRCEASIKHEDSVVIRGLDKELSEAEILDVLRMATSRRILDFFLVRGDVVGNPPCNACEEALLKEISPLMPKRNPHISSCRVRVFPPGPKDAFMRALITFDGRLHLEAAKALEQIEGKVLPGCLSWQKIKCQRLFHSTLTFPIHVYPVIKEQLEKVLASFSKLKGVEWKLDRTANGSHRVKITANATKTVAEVRRPLEELLRGKTIDHDSLTPAVLQLMLSRDGLNLKSSLQQETGTYMFFDRYNLDLRVFGSPNKIALAQKKVIQCLLSLHEGKQLEIHLRGRDLPPDLMKQVVKNFGPDLHGLKEKVPGADLKLNTHRQIIFLHGNKELKPKVEEMIFEIARSSHHLVERPDTGPSCPICLCEVEDGYQLEACRHLFCRLCLVEQCESAIRNQGSFPICCAHGGCGDPIVLTDLRSLLSNDKLEELFRASLGAFVTSSGGIYRFCPSPDCPSVYRVADPETGGEPFVCGSCYSETCTRCHLEYHPFLSCERYREFKEDPDSSLKEWCKGKEQVKSCPGCGYTIEKVDGCNHIECKCGNHVCWVCLEFFKSSEECYNHLRNIHMAII 1737
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi506g00002 1737 CDD BRcat_RBR 1613 1663 - -
Gabi506g00002 1737 SMART ultradead3 269 454 IPR014001 -
Gabi506g00002 1737 Pfam IBR domain, a half RING-finger domain 1605 1660 IPR002867 GO:0008270
Gabi506g00002 1737 Coils Coil 202 222 - -
Gabi506g00002 1737 Gene3D - 258 447 IPR027417 -
Gabi506g00002 1737 FunFam ATP-dependent RNA helicase DEAH12 chloroplastic 254 447 - -
Gabi506g00002 1737 MobiDBLite consensus disorder prediction 1 24 - -
Gabi506g00002 1737 SUPERFAMILY RING/U-box 1527 1602 - -
Gabi506g00002 1737 Pfam DEAD/DEAH box helicase 278 432 IPR011545 GO:0003676|GO:0005524
Gabi506g00002 1737 Pfam Helicase conserved C-terminal domain 483 600 IPR001650 -
Gabi506g00002 1737 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 387 396 IPR002464 -
Gabi506g00002 1737 ProSiteProfiles Zinc finger RING-type profile. 1528 1570 IPR001841 -
Gabi506g00002 1737 Pfam Helicase associated domain (HA2) 662 756 IPR007502 GO:0004386
Gabi506g00002 1737 FunFam ATP-dependent RNA helicase DEAH12 chloroplastic 1656 1734 - -
Gabi506g00002 1737 SMART ha2_5 661 757 IPR007502 GO:0004386
Gabi506g00002 1737 SUPERFAMILY RING/U-box 1612 1665 - -
Gabi506g00002 1737 Gene3D - 1656 1735 - -
Gabi506g00002 1737 Gene3D - 623 666 IPR042035 -
Gabi506g00002 1737 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 264 778 IPR027417 -
Gabi506g00002 1737 CDD Rcat_RBR_DEAH12-like 1683 1733 - -
Gabi506g00002 1737 CDD DEXHc_RHA-like 288 444 - -
Gabi506g00002 1737 FunFam Pre-mRNA-splicing factor ATP-dependent RNA helicase 623 666 - -
Gabi506g00002 1737 CDD SF2_C_RHA 449 609 - -
Gabi506g00002 1737 ProSitePatterns Zinc finger RING-type signature. 1544 1553 IPR017907 -
Gabi506g00002 1737 Gene3D - 448 620 IPR027417 -
Gabi506g00002 1737 MobiDBLite consensus disorder prediction 1 31 - -
Gabi506g00002 1737 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 475 641 IPR001650 -
Gabi506g00002 1737 ProSitePatterns Zinc finger C2H2 type domain signature. 1712 1733 IPR013087 -
Gabi506g00002 1737 SMART helicmild6 503 601 IPR001650 -
Gabi506g00002 1737 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 281 445 IPR014001 -
Gabi506g00002 1737 ProSiteProfiles TRIAD supradomain profile. 1524 1732 IPR044066 -
Gabi506g00002 1737 PANTHER ATP-DEPENDENT RNA HELICASE 260 907 - -
Gabi506g00002 1737 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 826 902 IPR011709 -
Gabi506g00002 1737 SMART ibrneu5 1595 1660 IPR002867 GO:0008270
Gabi506g00002 1737 SMART ibrneu5 1661 1725 IPR002867 GO:0008270
Gabi506g00002 1737 FunFam ATP-dependent RNA helicase DEAH12 chloroplastic 448 620 - -
Gabi506g00002 1737 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1525 1604 IPR013083 -
Gabi506g00002 1737 SUPERFAMILY RING/U-box 1682 1729 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi506g00002 Gabi-Chr506 56827 63410 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi506g00002 1543 1720 C3H Transcription Factor Family AT2G31770 26.776 6.78e-13 71.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi506g00002 K12818 - gmx:100810008 2744.92