Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi506g00001 ATGAAGAGACTTGCCAGCTCAGATAATTCTTCGGGTGCTCTCGTGTCAATCCCTCCATCAACAACAGACGAACACAGTCCAAGGAACAATCATTTGTATCGTAGGGATTTCCAATCGATGCTGGATGGAATTGATGAAGAAGGGTGTGTTGAAGAACCGGGGCATCACTCGGAGAAGAAACGTCGACTGAGTGTGGATCAAGTAAAGGCTTTAGAGACAAACTTCGAGGTAGAGAACAAGCTTGAACCTGATAGGAAGGTGAAGCTTGCCCAAGAACTTGGGTTGCAACCAAGACAAGTAGCCGTTTGGTTCCAAAACCGTCGAGCAAGATGGAAAACCAAGCAATTGGAAAGAGATTATGGCGTTCTCAAAGCCAATTATGAAGCTCTTAAGCTTAATCATGATACCCTCAAACAGGACAACGAAGCCTTACACAAAAAGATTAAGGAATTGAAATCAAGGTTGTTGCAAGAAGAAAACAACACTGCAAGCGGTGTTTCACTTTCGGTGAAGGAAGAGATAACTATGATGCCTGACTCTGAAGGAAGAGATAATAATAACCCATCTCCTGAAACATCAATTCCTTGTACAGAGTCCAAGGAACACTTGAATTATGATTATTGCTTCAACAACAACGATGTTGTCGGAGCCACCTCACTCTTCCCAACAGATTTCAAAGATGGTTTTTCTGATAGTGACTCAAGCGCAATCTTGAACGATGATAACAGCCCCAAAGCCACCGTTTCTTCATCTGGGGTTCTTCAAAGTCATCACCTTTTGTTGTCTCCTGAGTCTTCTTCTCCCTTGAATTGCTTCCAGTTTCAGAAATCGTACCATACACAAACACAGTATGTGAAGATGGAGGAGCACAATTTCTTCAGTGCAGATGAAGCCTGCAATTTCTTCTCGGATGAACAAGCACCGACCCTCCATTGGTACTGTCCAGATCAGTGGAATTAA 960 0.4313 MKRLASSDNSSGALVSIPPSTTDEHSPRNNHLYRRDFQSMLDGIDEEGCVEEPGHHSEKKRRLSVDQVKALETNFEVENKLEPDRKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYGVLKANYEALKLNHDTLKQDNEALHKKIKELKSRLLQEENNTASGVSLSVKEEITMMPDSEGRDNNNPSPETSIPCTESKEHLNYDYCFNNNDVVGATSLFPTDFKDGFSDSDSSAILNDDNSPKATVSSSGVLQSHHLLLSPESSSPLNCFQFQKSYHTQTQYVKMEEHNFFSADEACNFFSDEQAPTLHWYCPDQWN 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi506g00001 319 SUPERFAMILY Homeodomain-like 44 116 IPR009057 -
Gabi506g00001 319 Pfam Homeodomain 59 112 IPR001356 GO:0003677
Gabi506g00001 319 MobiDBLite consensus disorder prediction 1 29 - -
Gabi506g00001 319 CDD homeodomain 59 115 IPR001356 GO:0003677
Gabi506g00001 319 ProSitePatterns 'Homeobox' domain signature. 89 112 IPR017970 GO:0000981|GO:0006355
Gabi506g00001 319 PRINTS Lambda-repressor HTH signature 85 94 IPR000047 GO:0003677
Gabi506g00001 319 PRINTS Lambda-repressor HTH signature 94 110 IPR000047 GO:0003677
Gabi506g00001 319 SMART HOX_1 57 118 IPR001356 GO:0003677
Gabi506g00001 319 Coils Coil 113 161 - -
Gabi506g00001 319 MobiDBLite consensus disorder prediction 1 26 - -
Gabi506g00001 319 Gene3D - 54 121 - -
Gabi506g00001 319 ProSiteProfiles 'Homeobox' domain profile. 54 114 IPR001356 GO:0003677
Gabi506g00001 319 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 51 292 IPR045224 GO:0003700
Gabi506g00001 319 Pfam Homeobox associated leucine zipper 114 155 IPR003106 GO:0006355|GO:0043565
Gabi506g00001 319 FunFam Homeobox-leucine zipper protein HAT5 52 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi506g00001 Gabi-Chr506 19965 22070 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi506g00001 1 318 Homeobox Transcription Factor Family AT4G40060 46.667 1.18e-78 240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Gabi506g00001 Homeodomain 6.3e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi506g00001 K09338 - gmx:100796213 435.647