Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi5068g00005 ATGGCGATTCAAGATCAAAATGGATTTACTAGATCAATGGGTGGTCCTCCAGTTGGAAATGGAGTATCTTTGAGTTCTGGACTACATTCTGTTCCACATATTCAACTTAATGATCAGTTTTCTTGCGGGAATGACTATGCTCTGAAGGTAAGGAAACCATATACTATCACCAAACAGAGAGAGAAATGGACAGATGAAGAACATAAGAAGTTCCTTGAAGCTTTAAAGCTGTATGGCCGGGCCTGGCGACGTATCGAAGAACATGTTGGCACAAAGACTGCTGTTCAGATTCGAAGTCATGCTCAGAAGTTTTTTTCTAAGGTTCTTCGTGACTCTAGTGGGAACATTACAAGCACTGTGGAGTCGATTGAAATTCCTCCTCCAAGACCAAAACGAAAGCCAATGCATCCTTACCCTCGTAAGCTAGTAGAGAACTCCAATAAAGAAATTTCGATACTGGAACAGCCAATGAAGTCTAATTCTCTGAAGTCATCAGATTTTGATCAAGAAAACCAATCTCCCAAATCAGTATTATCTGCAGTTGGTTCAGACAGCCTTGGTTCCTCTGATTCAGATACACCAAATGGAAGTTTATCACCAATGTCATCCATAAGTGGTGTCCATACAAGTGGTTTTTCACTTGCTGAACCCAAAACACCATCAGAGGAACCCGGGCTAGATGTTGATTCAGCTCATGATGAGAAACCTCTTTTGAAACTCGAGCTTCCCACCAATGAAAGTCTTCCTGACAAAGAAGACACAGCAGAAGAATCATCTCGTCGTACTCTCAAACTTTTTGGGACGATTCTATTTGTAACTGATACCTGTAGACCATGTTCTCCAACAATTGAGGCATGCAAACCAATACCCCTTGACGTAAATGTCCATTGCCTCAGCAAAAGGGATGGAAAATTTGAACTTGTTGGTCACAGTACACCAAGTGAGACATCATCCATATCCCAACTAAGGGTGAAAGTGATACCTGAAACACGTGGCAAAGGGTTTCTTCCCTATAAAAGGTGCTTTGCAGAGAGAGAAAACCAGTCTTCATATGTAACCTCTGATAAGAGAGAAGAGCAACGTATACGCCTTTCCTTATAG 1101 0.416 MAIQDQNGFTRSMGGPPVGNGVSLSSGLHSVPHIQLNDQFSCGNDYALKVRKPYTITKQREKWTDEEHKKFLEALKLYGRAWRRIEEHVGTKTAVQIRSHAQKFFSKVLRDSSGNITSTVESIEIPPPRPKRKPMHPYPRKLVENSNKEISILEQPMKSNSLKSSDFDQENQSPKSVLSAVGSDSLGSSDSDTPNGSLSPMSSISGVHTSGFSLAEPKTPSEEPGLDVDSAHDEKPLLKLELPTNESLPDKEDTAEESSRRTLKLFGTILFVTDTCRPCSPTIEACKPIPLDVNVHCLSKRDGKFELVGHSTPSETSSISQLRVKVIPETRGKGFLPYKRCFAERENQSSYVTSDKREEQRIRLSL 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi5068g00005 366 MobiDBLite consensus disorder prediction 119 259 - -
Gabi5068g00005 366 NCBIfam myb-like DNA-binding domain, SHAQKYF class 58 107 IPR006447 GO:0003677
Gabi5068g00005 366 MobiDBLite consensus disorder prediction 126 143 - -
Gabi5068g00005 366 Pfam Myb-like DNA-binding domain 60 103 IPR001005 -
Gabi5068g00005 366 PANTHER SWI/SNF COMPLEX-RELATED 43 283 - -
Gabi5068g00005 366 FunFam protein REVEILLE 6 isoform X1 62 110 - -
Gabi5068g00005 366 ProSiteProfiles Myb-like domain profile. 55 105 IPR001005 -
Gabi5068g00005 366 MobiDBLite consensus disorder prediction 148 216 - -
Gabi5068g00005 366 MobiDBLite consensus disorder prediction 222 259 - -
Gabi5068g00005 366 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 55 109 IPR017930 -
Gabi5068g00005 366 SUPERFAMILY Homeodomain-like 54 107 IPR009057 -
Gabi5068g00005 366 ProSiteProfiles SANT domain profile. 58 109 IPR017884 -
Gabi5068g00005 366 CDD SANT 62 105 IPR001005 -
Gabi5068g00005 366 MobiDBLite consensus disorder prediction 1 23 - -
Gabi5068g00005 366 SMART sant 59 107 IPR001005 -
Gabi5068g00005 366 Gene3D - 62 108 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi5068g00005 Gabi-Chr5068 85506 88590 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Gabi5068g00005 Myb_DNA-binding 4.2e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi5068g00005 - - gmx:780539 538.495