Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi5068g00004 ATGTTACTTAGCGCGTTGATCTCCATCACCATTCTATTCACACTCACTTCACCAGCCATCTCTCGTTACTCTTCCCCTTCACCCCCAGCCGCTCCATTTTCCGAATCTCCCGACGAATGGCTATCCGCACGCGCCACCTACTACGCCTCCGCCGACAACCCCAGGGACGCGGTGGGCGGCGCGTGCGGCTACGGCGACCTCCTCAAGGCCAGTTACGGCATAGCCACCGCCGGCCTCAGTGAAGCACTCTTCGGCCGCGGCCAGATCTGCGGCGCGTGCTTCGAGCTCCGCTGCGTTGAGGAGGAAACACTCTTCGACCGCCGGTGGTGCATCTCCGGCACCTCCGTCATCGTCACCGCCACGAATTTCTGCGCCCCCAACTACGGCTTCGACGCCGAGAGTAACGGCGGGCATTGCAACCCTCCAAAGCAGCATTTCGTGGTACCCATTGAAGCTTTCGAGAAGATCGCAATCTGGAAGGCTGGGAACATGCCTGTAAAGTATAGAAGGATAAAGTGCAGAAGGGAAGGGGGAATCCGATTTACAATTACTGGTTCTGGTATCTTCGTTTCTGTGCTGATCAGTAATGTAGGTGGCACCGGAGACATTGTTGCTGTGAAGGTTAAGGGTTCAAGAACTGGTTGGCTTCCTATGGGTCGGAACTGGGGCCAAAACTGGCATGTAAGTGCCTTGCTACAGAATCAACCTCTTTCATTTGAGGTTACTAGTAGTGATGGGATAACAGTTACATCTTATAATGTTGCTCCCAAGGATTGGAGCTTTGGACAAACTTTTGTAGGGAGGCAATTTGAGTCTTAA 819 0.5372 MLLSALISITILFTLTSPAISRYSSPSPPAAPFSESPDEWLSARATYYASADNPRDAVGGACGYGDLLKASYGIATAGLSEALFGRGQICGACFELRCVEEETLFDRRWCISGTSVIVTATNFCAPNYGFDAESNGGHCNPPKQHFVVPIEAFEKIAIWKAGNMPVKYRRIKCRREGGIRFTITGSGIFVSVLISNVGGTGDIVAVKVKGSRTGWLPMGRNWGQNWHVSALLQNQPLSFEVTSSDGITVTSYNVAPKDWSFGQTFVGRQFES 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi5068g00004 272 PANTHER EXPANSIN-A15 17 270 IPR002963 GO:0009664
Gabi5068g00004 272 SUPERFAMILY Barwin-like endoglucanases 39 196 IPR036908 -
Gabi5068g00004 272 Gene3D - 179 270 IPR036749 -
Gabi5068g00004 272 CDD DPBB_EXPA_N 39 173 - -
Gabi5068g00004 272 SMART dpbb_1 76 168 IPR007112 -
Gabi5068g00004 272 Gene3D - 27 174 IPR036908 -
Gabi5068g00004 272 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 188 267 IPR007117 -
Gabi5068g00004 272 SUPERFAMILY PHL pollen allergen 175 266 IPR036749 -
Gabi5068g00004 272 PRINTS Expansin/Lol pI family signature 161 177 IPR007118 GO:0005576
Gabi5068g00004 272 PRINTS Expansin/Lol pI family signature 253 267 IPR007118 GO:0005576
Gabi5068g00004 272 PRINTS Expansin/Lol pI family signature 39 54 IPR007118 GO:0005576
Gabi5068g00004 272 PRINTS Expansin/Lol pI family signature 58 76 IPR007118 GO:0005576
Gabi5068g00004 272 PRINTS Expansin/Lol pI family signature 215 229 IPR007118 GO:0005576
Gabi5068g00004 272 PRINTS Expansin/Lol pI family signature 80 98 IPR007118 GO:0005576
Gabi5068g00004 272 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 59 178 IPR007112 -
Gabi5068g00004 272 Pfam Expansin C-terminal domain 179 256 IPR007117 -
Gabi5068g00004 272 Pfam Lytic transglycolase 77 168 IPR009009 -
Gabi5068g00004 272 PRINTS Expansin signature 253 269 IPR002963 GO:0009664
Gabi5068g00004 272 PRINTS Expansin signature 136 153 IPR002963 GO:0009664
Gabi5068g00004 272 PRINTS Expansin signature 153 166 IPR002963 GO:0009664
Gabi5068g00004 272 PRINTS Expansin signature 177 189 IPR002963 GO:0009664
Gabi5068g00004 272 PRINTS Expansin signature 224 245 IPR002963 GO:0009664
Gabi5068g00004 272 PRINTS Expansin signature 71 85 IPR002963 GO:0009664
Gabi5068g00004 272 PRINTS Expansin signature 189 210 IPR002963 GO:0009664
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi5068g00004 Gabi-Chr5068 63853 65671 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi5068g00004 39 272 Expansin Gene Family AT3G03220 76.068 7.28e-134 377
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi5068g00004 - - vvo:131622085 424.476