Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi5068g00003 ATGACAATGGGAGAAGAGTCCTTGACACAAGTCCCATTTGACAGAACTGTTGAACAGGCAATTGTGTCTATAAAGAAAGGTGCATATTTACTTAAGTCTGGTCGTAGAGGAAAGCCAAAGCTCTGCCCTTTCAGACTTTCTCCGGATGAGAGAAATTTGATTTGGTACTCAGGGCAGCAGGAAAAGCATTTGCGATTGAGTGCAGTTACAAAAATTATTCAAGGGCAAGGAAATATAAGGTCTCAGAAGCAAAATGAACCTGAAAAAGAATGCCATTCATTTTCACTAATCTATGCTAATGGTGAACGCTCTATTGATCTGATATGCAAGGACAAAGCACAAGCTGCTACTTGGTTAGTTGGCTTAAGAGCTGTGATTTCTAGGTGCCAGCATCCTAGAGCTTTGAGTAGTTTAAGAAGCTGCAAAGGGGTGCAGAGTTGTGTTAGTAGTCCAGCTGGAATTTTGCGGAGAAAGAAAAATCTTGGCCTTCTAGATGATACCTCTCAGTTTACTCAGGTACATAGCGTATGTGCAAGTCCTTCTTTGTCACTTTCAGAAAGGTGCTTTTCTGACGGCTTGTCATGTACATCTGATAACTTTTGTTCATCAGCATCTTTTCCCTCCAGCATTAATGGAATAATAGATAATTCAGTCCCAAGTTCTCCATATATTGATCCAGATATTGTTAGCAAGATTGAATCAACACACATTGACAAGGAGTACAAGAAGGATTTATCCTGTAGGTCTCTGATGCCTCCAACCTCCCCACGTGTAGGAAATAACAATGTGTTGAAGGATGTAATGGTATGGGGTGGAGGGATTGGATGTCTGGTAGGGATTGTGAATGAAAGGTTTGTCCAACGTGGTGTTTATTCCTTGGTGCCAAAGTTACTAGAATCCACTATGATGTTAGATGTACAAAATATAGCTTTAGGAGGAAAACATGCTGCCTTAGTTACAAAACAAGGGGAAGTGTTTTGTTGGGGTCAAGGGAAGTGGGGAAGACTGGGGCAAAAAATTGATATGGACATTAGTTCCCCCAAAATAGTTGAATCTCTTAACGGTATTCAAATAAAACAAGTTGCCTGTGGTGAGTATCATACATGTGGTTTGTCAGATTCTGGTGAAGTATATACATGGGGGAATGATGTTTGTTGTGCAGATTTTGTTGATGAAGGGAGAATTAGAAGTCAATGGATACCACATAAACTTTCTGGACCTTTAGATGGTATTAGTATTTCAAGTGTTACTTGTGGTGAATGGCACACTGCAATTGTCTCTAGCTGTGGTCGGTTATTTACATATGGAGATGGTACATTTGGAGTTCTTGGTCATGGGGATGTTCGGAGCTCTTCTAAACCAAAAGAAGTTGAATCTCTTAAAGGTCTAAGGGTGAGGTCTGTTGCTTGTGGTTCATGGCATACAGCTGCTATTGTCGATGTCATGTGTGACCGTTATAGGTACAGTACTACTAGTGGTAAGCTGTTTACATGGGGTGATGGAGATGAAGGGAGGCTTGGTCATGCTGATAATGGAAGCAAGCTTGTACCAACATGTGTTTCACAACTTGTTGACTATGATTTTGTTCAAGTATCTTGTGGAAGAATGTTGACTGTAGCACTTACTACTATGGGTAAGGTCTTTGCAATGGGAAGTGCAAAATATGGACAATTGGGAAATCCACATGCTAGGGATAAAGCAGCAGTTATGGTTGAAGGACAGCTTAAACAAGAGTTTGTTAAAGCGATATCATGTGGTTCATATCATGTTGCTGTTTTGACTTCTACAAGGAGTGTGTATACATGGGGCAAAGGTGAAAATGGACAACTGGGGCTAGGTGATACTGAAGACAGATACACACCTTCTTTTGTTGAGACTCTAAGGGACAGACAGGTAGATACTATAACTTGTGGACCAAGCTTCACAGCTGCAGTATGTTTACACAAACCTATTTCTATTAGTGACCAATCAACTTGTAGTGGTTGTAGGTTGCCATTTGGGTTCACAAGGAAGAAGCATCATTGTTATAACTGTGGTCTTTTGTTCTGCCGTTCTTGTAGTAGTAAAAAGGTTATAAATGCATCTCTAGCCCCAAGTAAGAGTAAGGCCTTTCGGGTTTGTGATCAGTGCTTTGATAAACGGCAAGGAAGTACACATTCAGTGATGGGTTCAAAGTCCAAAAGTTACAATACTCAGCAGATAGTGAAGCATCAGAAAAAAATTTCTGATTTGACTGAAGATAGGGGTGAAACAACTGTGACACAGGGTCCTCTATTGTCTCTCAGTCAATCATGTTACAGGAAAAGCATGCCTAGTGGAAGGAAGGACTGGAAAAACCAACAAGAAAGCCAGCATGGTTTAGAAGATAGTTCTTCTATGTTAGGTGGAGTTCCACAATGGGGGCAAGTTCCATGTCCTGCCCTATTTAAAATCAACTGTACAGAAAATTCAGTTGTGCATACAGATACAACAAAGTCTGATAAGATGCTTTTAGAAGAAGTTATGAGGCTGAGAGCTGAGGCTAGGAGACTTGAAGAGCAGTGTGAGCTCAAAAACCACAAAATACAAGAATGTCAACAAAAAGTTGAGGAGAGTTGGTTTGTGGCAAGGGAGGAAGCTGCTAAGTGCAAGGCAGCAAAAGAGGTCATAAAAGCTTTGGCATTAAGGCTTCATACAATATCTGGAAAAGAGAATGCTGGACAAGAAGGAAAGGTTGGGATACATGAAAGTCTGCCAAATTTGGCACCCATACATACAGATATCAATAGTCCAAGAGATGGCAACATGGACAGTCTTTCCAATTCCCCTATAGTATTCTCTGACACATTAAAATCCAAATTTGGGAGAAGTATGTTACTCAAAAGTGATAGATTATTGGAGAATTCTAATGCCACTAGATCAGAATCTCAACAAGAGACCAACGAAGGCTTGAAAGCCGAATGTGTAGAACAGTATGAGCCTGGTGTTTACATCACATTTACAACCTTGCCATGTGGTAAAAAGGGCCTTAAGCGAGTGAGATTTAGCCGGAGGAGATTCTCACAGAAGGAAGCTGAAAGATGGTGGGAAGAGAATCAAGGCACAGTCTACCATAAGTATGAGATTGAAGGATACATAAACACTAGCCAAAGTCAGGCTCTAGATGAGAAGCTTGCTTCAAGAAAGATGAAGGCAGTGCGCTTGGATGGTGAAGAAGAATTTATTGATTCTCAAATTATTGTGATGCTAGGTTGGAATAGGGCTGGAAAGACAACAATTATTCGAATGCTGGATGACTTATTGAAACCTAACACCATAGAAGGTAGATCTAATGTGGAGATGTCTGAGTTTAATGTTTCATACAAGCCTCATACGATTAGCCCCAAGTTCCAATCGACTATACTTCTTATTGAACGATTAATGGACCAAGAAGTTGTGAATCTTTCTGGTGGAGTGTTGGAAAGAGTTGCCTTATGTCTTTATCTTGGAAAGCATATAGGTATTTCAGGGAAAAAAGAACAAGGATTTGACAGAGAAAAGCATGAAAGAAAGCTGGGTTTCGAACCACTATTTCCCGCGATTAGCATGAAGATGGCGGGGATCGCGCCACAAGACAGGAAGAAGGGTCAGAAACCACTGTAA 3621 0.4068 MTMGEESLTQVPFDRTVEQAIVSIKKGAYLLKSGRRGKPKLCPFRLSPDERNLIWYSGQQEKHLRLSAVTKIIQGQGNIRSQKQNEPEKECHSFSLIYANGERSIDLICKDKAQAATWLVGLRAVISRCQHPRALSSLRSCKGVQSCVSSPAGILRRKKNLGLLDDTSQFTQVHSVCASPSLSLSERCFSDGLSCTSDNFCSSASFPSSINGIIDNSVPSSPYIDPDIVSKIESTHIDKEYKKDLSCRSLMPPTSPRVGNNNVLKDVMVWGGGIGCLVGIVNERFVQRGVYSLVPKLLESTMMLDVQNIALGGKHAALVTKQGEVFCWGQGKWGRLGQKIDMDISSPKIVESLNGIQIKQVACGEYHTCGLSDSGEVYTWGNDVCCADFVDEGRIRSQWIPHKLSGPLDGISISSVTCGEWHTAIVSSCGRLFTYGDGTFGVLGHGDVRSSSKPKEVESLKGLRVRSVACGSWHTAAIVDVMCDRYRYSTTSGKLFTWGDGDEGRLGHADNGSKLVPTCVSQLVDYDFVQVSCGRMLTVALTTMGKVFAMGSAKYGQLGNPHARDKAAVMVEGQLKQEFVKAISCGSYHVAVLTSTRSVYTWGKGENGQLGLGDTEDRYTPSFVETLRDRQVDTITCGPSFTAAVCLHKPISISDQSTCSGCRLPFGFTRKKHHCYNCGLLFCRSCSSKKVINASLAPSKSKAFRVCDQCFDKRQGSTHSVMGSKSKSYNTQQIVKHQKKISDLTEDRGETTVTQGPLLSLSQSCYRKSMPSGRKDWKNQQESQHGLEDSSSMLGGVPQWGQVPCPALFKINCTENSVVHTDTTKSDKMLLEEVMRLRAEARRLEEQCELKNHKIQECQQKVEESWFVAREEAAKCKAAKEVIKALALRLHTISGKENAGQEGKVGIHESLPNLAPIHTDINSPRDGNMDSLSNSPIVFSDTLKSKFGRSMLLKSDRLLENSNATRSESQQETNEGLKAECVEQYEPGVYITFTTLPCGKKGLKRVRFSRRRFSQKEAERWWEENQGTVYHKYEIEGYINTSQSQALDEKLASRKMKAVRLDGEEEFIDSQIIVMLGWNRAGKTTIIRMLDDLLKPNTIEGRSNVEMSEFNVSYKPHTISPKFQSTILLIERLMDQEVVNLSGGVLERVALCLYLGKHIGISGKKEQGFDREKHERKLGFEPLFPAISMKMAGIAPQDRKKGQKPL 1206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi5068g00003 1206 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 653 715 IPR017455 -
Gabi5068g00003 1206 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 597 648 IPR000408 -
Gabi5068g00003 1206 SUPERFAMILY PH domain-like 16 126 - -
Gabi5068g00003 1206 ProSiteProfiles BRX domain profile. 979 1034 IPR013591 -
Gabi5068g00003 1206 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 323 374 IPR000408 -
Gabi5068g00003 1206 Pfam Transcription factor regulating root and shoot growth via Pin3 979 1033 IPR013591 -
Gabi5068g00003 1206 Pfam FYVE zinc finger 655 713 IPR000306 GO:0046872
Gabi5068g00003 1206 PRINTS Chromosome condensation regulator RCC1 signature 416 432 IPR000408 -
Gabi5068g00003 1206 PRINTS Chromosome condensation regulator RCC1 signature 325 341 IPR000408 -
Gabi5068g00003 1206 PRINTS Chromosome condensation regulator RCC1 signature 534 552 IPR000408 -
Gabi5068g00003 1206 PRINTS Chromosome condensation regulator RCC1 signature 375 391 IPR000408 -
Gabi5068g00003 1206 PRINTS Chromosome condensation regulator RCC1 signature 432 446 IPR000408 -
Gabi5068g00003 1206 PRINTS Chromosome condensation regulator RCC1 signature 306 319 IPR000408 -
Gabi5068g00003 1206 PRINTS Chromosome condensation regulator RCC1 signature 592 613 IPR000408 -
Gabi5068g00003 1206 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 61 891 - -
Gabi5068g00003 1206 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1070 1153 IPR027417 -
Gabi5068g00003 1206 CDD PH_PLC_plant-like 15 127 - -
Gabi5068g00003 1206 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 545 596 IPR000408 -
Gabi5068g00003 1206 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 655 725 IPR013083 -
Gabi5068g00003 1206 Pfam Pleckstrin homology domain 18 124 IPR001849 -
Gabi5068g00003 1206 SUPERFAMILY FYVE/PHD zinc finger 654 728 IPR011011 -
Gabi5068g00003 1206 Coils Coil 827 861 - -
Gabi5068g00003 1206 Gene3D - 256 387 IPR009091 -
Gabi5068g00003 1206 Gene3D - 389 483 IPR009091 -
Gabi5068g00003 1206 Gene3D - 485 654 IPR009091 -
Gabi5068g00003 1206 SMART fyve_4 647 716 IPR000306 GO:0046872
Gabi5068g00003 1206 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 430 481 IPR000408 -
Gabi5068g00003 1206 SUPERFAMILY RCC1/BLIP-II 266 649 IPR009091 -
Gabi5068g00003 1206 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 468 478 IPR000408 -
Gabi5068g00003 1206 Gene3D - 16 133 IPR011993 -
Gabi5068g00003 1206 CDD FYVE_like_SF 658 711 - -
Gabi5068g00003 1206 Pfam Regulator of chromosome condensation (RCC1) repeat 430 478 IPR000408 -
Gabi5068g00003 1206 Pfam Regulator of chromosome condensation (RCC1) repeat 323 369 IPR000408 -
Gabi5068g00003 1206 Pfam Regulator of chromosome condensation (RCC1) repeat 599 645 IPR000408 -
Gabi5068g00003 1206 Pfam Regulator of chromosome condensation (RCC1) repeat 492 541 IPR000408 -
Gabi5068g00003 1206 Pfam Regulator of chromosome condensation (RCC1) repeat 545 593 IPR000408 -
Gabi5068g00003 1206 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 375 429 IPR000408 -
Gabi5068g00003 1206 MobiDBLite consensus disorder prediction 769 791 - -
Gabi5068g00003 1206 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 493 544 IPR000408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi5068g00003 Gabi-Chr5068 22049 35578 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi5068g00003 980 1069 Major Intrinsic Protein MIP AT1G31880 36.264 8.43e-12 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi5068g00003 - - gmx:100794953 1762.27