Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi5068g00001 ATGGCACCTGTTTCATTGCCTCCTGGGTTTAGGTTCCACCCCACAGATGAAGAACTTGTTGCTTATTACCTCAAAAGTAAGATAAATGGCCGTAAGATTGAGTTGGAGATCATCCCTGAAGTTGATCTCTACAAGTGTGAACCATGGGACTTGCCAGGGAAGTCATTGTTACCGGGAAAAGATTTGGAGTGGTATTTCTTTAGCCCTCGAGATAGGAAGTACCCAAATGGATCAAGAACAAACCGTGCAACAAAATCTGGATATTGGAAAGCCACAGGGAAAGATCGTAATGTTAACTCCCAGACTCGTGCTGTTGGAATGAAGAAAACCCTAGTTTACTATCGAGGCAGGGCCCCACATGGATCTAGAACAGGTTGGGTTATGCATGAGTACCGTCTTGATGAAAGAGAATGTGAAACTGCTTCAGGCTTGCAGGATGCATATGCTCTTTGCCGTGTGTTCAAGAAGAGCACAGTGATTCCCCCAAAAGTTGGAGAGCAATATGTTAATGTCACCACCAGCCATGCAAATCAGATTACAAGTGACCAATCATCAAGCATTGAGCTATACTCTGAAGGAAGAGGTGAAGTTTTAGAGAGTTCAAATTATTTGATGCCATGGGATACATGTTCAACTCAAAACATGAATAATGGGACTTCTGTTAATATCAATGGTGGGACAAGGGATAATGGGTTGTGGTCACATTTCTTATCTGAAGACTTACTCAATCTTCCAACCTCTTCTTCATTTCCCAATTATGGAGCCATACCTTACCCTCCATCCAAGGTTGATATAGCACTAGAGTGTGCAAGGATGCAGCATAGGTTTTCCATGCCTCCATTGGAGGTGGAGGACTTTCCTCAAGTTGGTATTTCTCATGAGCTGAAAATGACACAAGCCTCGGGTTCCATGTGTGGAAGCAGAAATGAAACCGATATCCTACAGGAAATTCTTTCAGTTGCTCAAGCTTCCCAGGAATTGATAAATCAATCCAATTATTCACAGACATTAATGGGTGGAAATGAAAATTATGCTCCTCATGAAAATGATTTTACTTTTATGGTTGGCACTGATTACAATAATGTAAATTATGATATGAACTCCATGAGATATGTTGACAAAGCATGGGAAGATCCAAACACAAGATCCATAGAGATTGGGGATCTTGGTGATGAATTCAAGTCAGAGAGGATGGTTGAGAATTTAAGATGGGTTGGAATGTCAAGCAAAGATTTAGGAAAGGGCTTTATGGAAGAGCATAAGATTGTTCCAATCGAGGAGATTTCAAGTTTCCAAACAAACAGGGAAGAGAATGAGGTGCAAGAATCTGAGCAACACAATAGCAACAAAGAACTCAATGATACTGACATTGACGATTTCTCATTGGGGTTCATCAATGATGATGACCCCAATGAGAACTTTATAGATGATGGTAACATTGACTATTCAAATTCTACAAGCTTTGAGGTTGTTGAGGAAACAAAAGTAAGTCATGGAATGTTTGTTTCAACTCGTCAAGTAGCCGAGACATTCTTTCACCAAATTGTTCCTTCACAAACCATCAAAGTTCAACTCAATCCTATAATGGCCACCAATCAATCTATAGAGAATGCAGAGACACTGATTATTATGAAGAACAAAGGGTACTCTTTCCTTAACAAGTTTAAGGCCTGTGTGATGGGGAAGCTAGTAAAGCCATCAAACACTATAGCAAGTGCCCTTGTATTTATCTTTGCACTTTTGTTGATGCATTGTGTATACTTGAAGGAACAAGTGGAAGAAGATATGAAACAAGGTCCAGAGGATGTGAAAAAGAAGTGGTGCTCTAGTGCTAATAGCATGAAGAGAATGAGAAAACCAGATGAGAAAATCATATGGAATGAGCAAGAAAAAATTTGGTTTGTTGGTATCAAAAGTGGGAAAGGATTTAATGTGGTCTTGAAGAAGATAGGCATTTTCCTCACTATATCTTTGGCTCTTTGTACTATGTGGGCTAACCACATCATAGTTCACCCTTGA 2019 0.3992 MAPVSLPPGFRFHPTDEELVAYYLKSKINGRKIELEIIPEVDLYKCEPWDLPGKSLLPGKDLEWYFFSPRDRKYPNGSRTNRATKSGYWKATGKDRNVNSQTRAVGMKKTLVYYRGRAPHGSRTGWVMHEYRLDERECETASGLQDAYALCRVFKKSTVIPPKVGEQYVNVTTSHANQITSDQSSSIELYSEGRGEVLESSNYLMPWDTCSTQNMNNGTSVNINGGTRDNGLWSHFLSEDLLNLPTSSSFPNYGAIPYPPSKVDIALECARMQHRFSMPPLEVEDFPQVGISHELKMTQASGSMCGSRNETDILQEILSVAQASQELINQSNYSQTLMGGNENYAPHENDFTFMVGTDYNNVNYDMNSMRYVDKAWEDPNTRSIEIGDLGDEFKSERMVENLRWVGMSSKDLGKGFMEEHKIVPIEEISSFQTNREENEVQESEQHNSNKELNDTDIDDFSLGFINDDDPNENFIDDGNIDYSNSTSFEVVEETKVSHGMFVSTRQVAETFFHQIVPSQTIKVQLNPIMATNQSIENAETLIIMKNKGYSFLNKFKACVMGKLVKPSNTIASALVFIFALLLMHCVYLKEQVEEDMKQGPEDVKKKWCSSANSMKRMRKPDEKIIWNEQEKIWFVGIKSGKGFNVVLKKIGIFLTISLALCTMWANHIIVHP 672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi5068g00001 672 MobiDBLite consensus disorder prediction 432 455 - -
Gabi5068g00001 672 FunFam Nac domain-containing protein 86 15 159 - -
Gabi5068g00001 672 Gene3D NAC domain 15 159 IPR036093 GO:0003677|GO:0006355
Gabi5068g00001 672 Pfam No apical meristem (NAM) protein 7 133 IPR003441 GO:0003677|GO:0006355
Gabi5068g00001 672 MobiDBLite consensus disorder prediction 437 455 - -
Gabi5068g00001 672 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 5 273 - -
Gabi5068g00001 672 ProSiteProfiles NAC domain profile. 6 156 IPR003441 GO:0003677|GO:0006355
Gabi5068g00001 672 SUPERFAMILY NAC domain 4 156 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi5068g00001 Gabi-Chr5068 5690 9533 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi5068g00001 1 663 NAC Transcription Factor Family AT1G65910 45.655 4.60e-173 506
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Gabi5068g00001 NAM 1.7e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi5068g00001 - - gsj:114381841 1063.14