LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gabi5063g00006	ATGGATATGTTTAATCAGAGGAAGAAAAGCACAGGCCGCAAGAAGATTGAGATCAAGAAGATTGAGAAGGATAGCAACAAGAATGTCACATTCTCGAAACGACGAGGAGGTTTGTTCAAAAAAGCTAGCGAACTCTGTATTTTATGCAATATTCATGCGGCCATAATTGTGTTTTCTCCTGCTAACAAATGCTACTGCTTTGGCCAACCCAACGCGGAGACCATCCTCACCAGTTATCTCAAAGGAACCAAAGATTTTAACCCTACAGAGCCAATAGACAAATCAGTGTCCTACAACGATGTCCTTGATAGAGAATATGAGGAGGCCATAAAGAGGTTGGAATTGGAAAACAAGAAACTTGCAGACACTGAGACTATAGCAAAGTTTTGGAAAAAAGAGGATTGGTGGAACGAGTCGATTGATGATATGAATAACGATCAGCTAGAGGAATTTATGATGTCCATGTCTGAGTTAAGGTGGAACCTAGCTGAAAGGGCAGGTGCACGGGTGATGATGCATCCAATGCAATAG	531	0.4162	MDMFNQRKKSTGRKKIEIKKIEKDSNKNVTFSKRRGGLFKKASELCILCNIHAAIIVFSPANKCYCFGQPNAETILTSYLKGTKDFNPTEPIDKSVSYNDVLDREYEEAIKRLELENKKLADTETIAKFWKKEDWWNESIDDMNNDQLEEFMMSMSELRWNLAERAGARVMMHPMQ	176

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gabi5063g00006	176	Gene3D	-	23	100	IPR036879	GO:0003677\|GO:0046983
	Gabi5063g00006	176	FunFam	Agamous-like MADS-box protein AGL62	23	88	-	-
	Gabi5063g00006	176	SMART	madsneu2	11	70	IPR002100	GO:0003677\|GO:0046983
	Gabi5063g00006	176	Coils	Coil	99	123	-	-
	Gabi5063g00006	176	PRINTS	MADS domain signature	33	48	IPR002100	GO:0003677\|GO:0046983
	Gabi5063g00006	176	PRINTS	MADS domain signature	13	33	IPR002100	GO:0003677\|GO:0046983
	Gabi5063g00006	176	PRINTS	MADS domain signature	48	69	IPR002100	GO:0003677\|GO:0046983
	Gabi5063g00006	176	PANTHER	MADS BOX PROTEIN	13	162	-	-
	Gabi5063g00006	176	ProSiteProfiles	MADS-box domain profile.	11	71	IPR002100	GO:0003677\|GO:0046983
	Gabi5063g00006	176	Pfam	SRF-type transcription factor (DNA-binding and dimerisation domain)	20	67	IPR002100	GO:0003677\|GO:0046983
	Gabi5063g00006	176	SUPERFAMILY	SRF-like	12	82	IPR036879	GO:0003677\|GO:0046983

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gabi5063g00006	Gabi-Chr5063	85171	85701	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gabi5063g00006	10	159	Type I MADS-box Gene Family	AT2G24840	38.961	8.63e-31	110

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MADS-M-type	Gabi5063g00006		SRF-TF	1.8e-23	No_clan